Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H19
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    31   1.1  
Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical p...    29   5.7  

>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 436 LSWRLSSXPCFSISLFGLTITSFL*YFFLKLYRS--ISLCSTTTL--YLILFVFL 284
           ++ RL       +S  G+ I  ++ YFFLKL ++    LCS+ T+   +ILF +L
Sbjct: 6   IATRLVGAHMLLVSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYL 60


>Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical
           protein F55B12.9 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -1

Query: 451 ISAVFLSWRLSSXPCFSISLFGLTITSFL*YFFLKL------YRSISLCSTTTLYLILFV 290
           +S  F  + + S  C  ISLFG  +  FL Y FL+       ++ I L  T   ++I F 
Sbjct: 1   MSPAFFIFAIGS--CLIISLFGSAVNFFLFYKFLRRDGKPNGFQKICLVKTLPNFVICFA 58

Query: 289 FL 284
           FL
Sbjct: 59  FL 60


>Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 279 NQRKTNKIR*SVVVEQSE-IER*SFKKKYHRKDVIVRPKREIEKQGILLSRQDKNTAEI 452
           N+   N+++  +V EQ++ +ER + K++ HR+D++   K  + ++     R +K   E+
Sbjct: 24  NRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEEL 82


>Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 279 NQRKTNKIR*SVVVEQSE-IER*SFKKKYHRKDVIVRPKREIEKQGILLSRQDKNTAEI 452
           N+   N+++  +V EQ++ +ER + K++ HR+D++   K  + ++     R +K   E+
Sbjct: 24  NRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEEL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,969
Number of Sequences: 27780
Number of extensions: 182394
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)