Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H17
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    31   1.2  

>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
            28142350-28142535,28144695-28145076,28145689-28145780,
            28145988-28146737,28146969-28147100,28147149-28147247,
            28147977-28148132,28150187-28150317,28150798-28151254,
            28151327-28151668,28152137-28153001,28153112-28153170,
            28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +2

Query: 599  TSKDQKKSLVIXTNDQSF*SSVYLSLSMQFECNCNIQSVAKTLSEREIFT 748
            T +D  KSL +  N       VYLS S   E   ++ +  K  SEREIFT
Sbjct: 1134 TKRDVCKSLAV-ANALELLKMVYLSTSSGPEVQASLTATFKLYSEREIFT 1182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,953
Number of Sequences: 37544
Number of extensions: 199676
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)