Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H16
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   123   2e-28
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   108   5e-24
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     73   3e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   3.8  
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079...    28   8.8  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  123 bits (297), Expect = 2e-28
 Identities = 64/133 (48%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
 Frame = +3

Query: 96  RPQLIKARGAEADSFEPSISQALVELET-NSDLKAQLRXLYITKAKEIELH-NKKSIIIY 269
           R ++ K +G E   FE S++QA  +LE  N +LK++L+ LYI  A ++++  N+K+++I+
Sbjct: 5   RKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIH 64

Query: 270 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 449
           VP    KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT
Sbjct: 65  VPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLT 120

Query: 450 SVYDAILEDLVFP 488
           +V+D ILED+V+P
Sbjct: 121 AVHDGILEDVVYP 133



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +1

Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANGTRSYLRVPRT 657
           AEIVGKRIR +LDG+++IK+ LD  ++   E+K++TF    +   G       P T
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMT 189


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  108 bits (260), Expect = 5e-24
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
 Frame = +3

Query: 156 QALVELET-NSDLKAQLRXLYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 329
           QA  +LE  N +LK+ L+ LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 330 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 488
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D ILED+V+P
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYP 146



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +1

Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANGTRSYLRVPRT 657
           AEIVGKR+R  LDG +++K+ LD  ++   E+K+DTF    +   G       P T
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMT 202


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +3

Query: 210 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 389
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 390 PSHKTRVANKQKRPRSRTLTSVYDAILEDLV 482
           P +K    +    PR+RTL +V+D ILED+V
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILEDVV 116


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 424 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 308
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>09_04_0287 -
           16407324-16407551,16407647-16407748,16407824-16407922,
           16408213-16408332,16408513-16408632,16408740-16408834,
           16409109-16409365,16410134-16410309,16410401-16410587,
           16410656-16411002,16411722-16411823,16411917-16412414,
           16412520-16412624
          Length = 811

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 93  LRPQLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHNKKSIIIYV 272
           LRP L++    + +   P   + ++     +D + Q++   + +  +  LH K  I +Y 
Sbjct: 503 LRPFLLRRMKEDVEHMLPRKKEIIIYANM-TDHQKQIQNHLVEQTFDQYLHEKSEIGLYP 561

Query: 273 PMPK-LKAFQKIQIRLVRELEKKFSGKHVVFV 365
           P+ K L+   K Q+ L R L    + KH V +
Sbjct: 562 PVEKLLEQCGKFQL-LNRLLSLLLARKHKVLI 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,867
Number of Sequences: 37544
Number of extensions: 331199
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)