Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_H16
(904 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 189 1e-47
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 189 1e-47
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 189 1e-47
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 189 1e-47
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 189 1e-47
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 189 1e-47
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 62 3e-09
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 5.7
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 5.7
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 5.7
BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4 pro... 31 5.7
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 5.7
AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens ... 31 5.7
AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41... 31 5.7
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 31 7.6
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 31 7.6
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 31 7.6
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 31 7.6
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 31 7.6
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 31 7.6
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 31 7.6
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 7.6
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 31 7.6
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 31 7.6
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 31 7.6
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 31 7.6
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 66
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 127 DAILEDLVFP 136
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 137 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 174 SGVYKKLTGKDVNFEFPE 191
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 5 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 64
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 65 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 124
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 125 DAILEDLVFP 134
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 135 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 180
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 172 SGVYKKLTGKDVNFEFPE 189
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 66
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 127 DAILEDLVFP 136
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 137 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 174 SGVYKKLTGKDVNFEFPE 191
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 66
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 127 DAILEDLVFP 136
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 137 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 174 SGVYKKLTGKDVNFEFPE 191
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 66
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 127 DAILEDLVFP 136
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 137 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 174 SGVYKKLTGKDVNFEFPE 191
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 189 bits (461), Expect = 1e-47
Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 102 QLIKARGAEADSFEPSISQALVELETNSDLKAQLRXLYITKAKEIELHN-KKSIIIYVPM 278
+++K G + D FE ISQAL+ELE NSDLKAQLR L IT AKEIE+ +K+III+VP+
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPV 66
Query: 279 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 458
P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126
Query: 459 DAILEDLVFP 488
DAILEDLVFP
Sbjct: 127 DAILEDLVFP 136
Score = 67.3 bits (157), Expect = 7e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 627
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF ++ G
Sbjct: 137 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTG 182
Score = 35.1 bits (77), Expect = 0.35
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 602 SSVYKKLTGREVTFEFPE 655
S VYKKLTG++V FEFPE
Sbjct: 174 SGVYKKLTGKDVNFEFPE 191
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 62.1 bits (144), Expect = 3e-09
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +1
Query: 490 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANGTRS 636
+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV F ++ + + S
Sbjct: 28 SEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVIGQHFIMERFSHSES 76
Score = 36.3 bits (80), Expect = 0.15
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 435 SRTLTSVYDAILEDLVFP 488
SRTLT+V+DAILEDLVFP
Sbjct: 10 SRTLTAVHDAILEDLVFP 27
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 153 SQALVELETNSDLKAQLRXLYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 320
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 321 RELEKKFSGK 350
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 153 SQALVELETNSDLKAQLRXLYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 320
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 321 RELEKKFSGK 350
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 153 SQALVELETNSDLKAQLRXLYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 320
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 321 RELEKKFSGK 350
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4
protein.
Length = 245
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 154 EIEGSKESASAPRALMSCGRSLTTLXGGKESRRP 53
EI GS+ A RAL++C S T G+ RRP
Sbjct: 57 EIRGSRARALPDRALVNCQYSSATFSTGERKRRP 90
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 153 SQALVELETNSDLKAQLRXLYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 320
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 321 RELEKKFSGK 350
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ20591 fis, clone KAT09018. ).
Length = 245
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 154 EIEGSKESASAPRALMSCGRSLTTLXGGKESRRP 53
EI GS+ A RAL++C S T G+ RRP
Sbjct: 57 EIRGSRARALPDRALVNCQYSSATFSTGERKRRP 90
>AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41
protein.
Length = 245
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 154 EIEGSKESASAPRALMSCGRSLTTLXGGKESRRP 53
EI GS+ A RAL++C S T G+ RRP
Sbjct: 57 EIRGSRARALPDRALVNCQYSSATFSTGERKRRP 90
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 30.7 bits (66), Expect = 7.6
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 165 VELETNSDLKAQLRXLYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 338
VE ET S K Q ++ + KE+ E+HNK+ + M + QK Q R + ELEKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 7.6
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 162 LVELETNSDLKAQLRXLYITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVRELE 332
LVEL L + Y++ + + + K + +IY VP ++ FQK++++ +E E
Sbjct: 100 LVELGDLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAE 159
Query: 333 KKFSGK 350
K F GK
Sbjct: 160 KMFKGK 165
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 30.7 bits (66), Expect = 7.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 246 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 425
+K + + V MPK K + K+ + +R +KK G + + +PKP T V+ K
Sbjct: 751 SKAMVFMDVRMPKFKIYGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVK 806
Query: 426 RPRSRTLTSVYDAILEDLVFP 488
+ +T TS+ + + + P
Sbjct: 807 SFQIQTSTSLGTSQISQKIIP 827
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,618,759
Number of Sequences: 237096
Number of extensions: 1886301
Number of successful extensions: 3746
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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