Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H13
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   182   8e-47
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   182   8e-47
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.67 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.88 
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   3.6  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   6.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   6.2  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  182 bits (442), Expect = 8e-47
 Identities = 83/155 (53%), Positives = 109/155 (70%)
 Frame = +2

Query: 104 LKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 283
           L+ QK LAASV++CGK+ VW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63

Query: 284 RKNTEARRKGRHCGFGKRRGTANARMPQKEXXXXXXXXXXXXXXXYXTAKKIDRHLYHSL 463
           RK   A+R GRH G+GKR+GTA ARMP                  Y  + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 464 YMKAKGNVFXNKRVLMEYXHRKKAXKAXTXMLSDQ 568
           Y++AKGN F +KR L+E+  R KA    T ++ +Q
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  182 bits (442), Expect = 8e-47
 Identities = 83/155 (53%), Positives = 109/155 (70%)
 Frame = +2

Query: 104 LKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 283
           L+ QK LAASV++CGK+ VW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63

Query: 284 RKNTEARRKGRHCGFGKRRGTANARMPQKEXXXXXXXXXXXXXXXYXTAKKIDRHLYHSL 463
           RK   A+R GRH G+GKR+GTA ARMP                  Y  + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 464 YMKAKGNVFXNKRVLMEYXHRKKAXKAXTXMLSDQ 568
           Y++AKGN F +KR L+E+  R KA    T ++ +Q
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 297 SVFLRTRAREWTATGFLMTRPSLIILRMFC 208
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 238 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 149
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 643 FLLXGGNT-----FLAALACLLYFIAAGL 572
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 217 DVLSGVGVCDLIDFIWIQPHLLFTTXHNRGCK 122
           +VLS +    ++D  +  PHLL  +  N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 101 PLKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKM 226
           PL++ +  A   +  GK  ++LDP     I+N  + Q +R++
Sbjct: 260 PLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAFQQVREV 301


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 374 VPSVAYAHWQYLFSYQS 324
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,667
Number of Sequences: 5004
Number of extensions: 49058
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)