Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_H13
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 200 1e-51
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 199 3e-51
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 34 0.17
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 34 0.17
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 5.0
04_04_1687 - 35365766-35366356,35367137-35368135 29 6.6
02_05_0067 + 25557975-25558553 29 6.6
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 6.6
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 200 bits (488), Expect = 1e-51
Identities = 93/157 (59%), Positives = 112/157 (71%)
Frame = +2
Query: 98 VPLKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 277
V LKLQK LAASV++CGK VWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+
Sbjct: 2 VSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRS 61
Query: 278 RVRKNTEARRKGRHCGFGKRRGTANARMPQKEXXXXXXXXXXXXXXXYXTAKKIDRHLYH 457
R R+ EA++KGRH G+GKRRGT AR+P K Y AKKID+H+YH
Sbjct: 62 RARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYH 121
Query: 458 SLYMKAKGNVFXNKRVLMEYXHRKKAXKAXTXMLSDQ 568
+YMK KGN+F NKRVLME H+ KA KA LSDQ
Sbjct: 122 DMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 199 bits (485), Expect = 3e-51
Identities = 92/157 (58%), Positives = 112/157 (71%)
Frame = +2
Query: 98 VPLKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 277
V LKLQK LA+SV++CGK VWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+
Sbjct: 2 VSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRS 61
Query: 278 RVRKNTEARRKGRHCGFGKRRGTANARMPQKEXXXXXXXXXXXXXXXYXTAKKIDRHLYH 457
R R+ EA++KGRH G+GKRRGT AR+P K Y AKKID+H+YH
Sbjct: 62 RARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYH 121
Query: 458 SLYMKAKGNVFXNKRVLMEYXHRKKAXKAXTXMLSDQ 568
+YMK KGN+F NKRVLME H+ KA KA LSDQ
Sbjct: 122 DMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 110 LQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 280
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 281 VRKNTEARRKGRHCGFG 331
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 110 LQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 280
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 281 VRKNTEARRKGRHCGFG 331
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 179 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 352
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 244 HQETCSSPLPRPCPQKHR 297
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>02_05_0067 + 25557975-25558553
Length = 192
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 503 HACSXTHYPSPSCRVSGIDACQSSW 429
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 236 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 349
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,636,013
Number of Sequences: 37544
Number of extensions: 402081
Number of successful extensions: 969
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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