Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H13
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   191   7e-49
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  191 bits (465), Expect = 7e-49
 Identities = 86/155 (55%), Positives = 111/155 (71%)
 Frame = +2

Query: 104 LKLQKXLAASVMRCGKKXVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 283
           L+LQK LA++V++CGK  VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR R 
Sbjct: 4   LRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRA 63

Query: 284 RKNTEARRKGRHCGFGKRRGTANARMPQKEXXXXXXXXXXXXXXXYXTAKKIDRHLYHSL 463
           R+  EARRKGRH G+GKRRGTANARMP+K                Y  AKK+D+HLYH L
Sbjct: 64  REYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHEL 123

Query: 464 YMKAKGNVFXNKRVLMEYXHRKKAXKAXTXMLSDQ 568
           Y++AKGN F NK+ L+EY  +KK        L+DQ
Sbjct: 124 YLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 191  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 325
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 203 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 316
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,861
Number of Sequences: 27780
Number of extensions: 301954
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)