Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H12
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.5  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    28   1.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.6  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   4.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   8.2  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 350  LYKPFTENLHQMYSLLRSET---LESAEXKFIVFKERIPIFIQITKDCTVSTLQKLCDIL 520
            LYK F++ + + Y+L+R      L   + +FI F + +  F+    D     L  +  +L
Sbjct: 825  LYKSFSDKVQENYNLIRIAAKFMLLWTQEEFIGFSKALDSFLSENDDLIYKNLDYVAPLL 884

Query: 521  SEXXSWT 541
             E   +T
Sbjct: 885  FECMQFT 891


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 314 GKNPKDKYYEIVLYKPFTENLHQMYSLLRSETLESAEXKFIVFKERIPIFIQITKDCTV 490
           GKN     +E +  K  TE   Q+   L + ++        V  ERI  F+ +   CTV
Sbjct: 202 GKNQPSLNFENISKKDLTEEFKQVIENLMNNSIIPGSPYIEVKNERIVSFLVLASLCTV 260


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 305 PNDGKNPKDKYYEIVLYKPFTENLHQMYSLLRSETLESAEXKFIVFKERIPIFIQITKDC 484
           PN  K P D   ++V Y  +   L  +  L  ++T E       +FK  + I I++TKD 
Sbjct: 218 PNCFKKP-DGSIDLVNYASYVVVL-SLGCLAIADTEEQVSRANALFKNTLGISIEVTKDM 275

Query: 485 TVSTL 499
           +  TL
Sbjct: 276 SFRTL 280


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 150 NKTDHNAEFIFSWSSSYRRAADQSPRRAIRQLHLTTSSL 266
           NKT HN ++I S+   Y   A QS  +   + H +++SL
Sbjct: 530 NKTQHNIKYIDSYVPEY-SIARQSANQKTNEQHPSSTSL 567


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 318 KILKINITKSFYTNRLQRIYI 380
           +I+K+N+TK FY   LQ I I
Sbjct: 510 EIVKVNLTKRFYLEALQYIDI 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,222
Number of Sequences: 5004
Number of extensions: 55112
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)