Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H12
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    31   1.1  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    30   1.9  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    30   2.5  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 314 GKNPKDKYYEIVLYKPFTENLHQMYSLLRSETLESAEXKFI 436
           G   K+ YY  ++YKP  +N H    LL  E  +  E  +I
Sbjct: 19  GGGDKEYYYTQMMYKPIADNSHTGAKLLNIELNKQCEESYI 59


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +2

Query: 317 KNPKDKYYEIVLYKPFTENLHQMYSLLRSETLESAEXKFIVFKERIPIFIQITKDCTVST 496
           K P+ +YY ++ YK +T   + +Y   R   +      +  FK+  P    +  + T S+
Sbjct: 383 KLPRIRYYSVLAYKCYTMKYYDLYYFNRRSGITCPGPLYCKFKQH-PKINCMQANVTYSS 441

Query: 497 LQKLCDI 517
           ++KL  I
Sbjct: 442 MRKLLPI 448


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 QLHLTTSSLQGKIVCYCMVRKYRMTVK 320
           QL +  SS+   ++CYCM  +YR T+K
Sbjct: 318 QLLVMASSIAHCVICYCMSSQYRDTLK 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,977,821
Number of Sequences: 27780
Number of extensions: 318808
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)