Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H09
         (903 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    24   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.6  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 124 N*NSWSSQNGNLFVATEKRTNQNKSXRXF 38
           N   WSS N N     +K  N+N   R F
Sbjct: 42  NQEQWSSLNKNFQFIDKKLNNRNSKSRVF 70


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 141 IRC*CYSTRRDGGCGGRNISLYLVERKEGSPTARSSRRESA 263
           + C  YS R   G   R   +     K+G+PTA   R  +A
Sbjct: 194 VYCTRYSDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTA 234


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 330 CTRKYYFANKIIFPLHYVLLL 268
           C++K +  N  IF L+ VLLL
Sbjct: 108 CSKKSFRMNFAIFNLYMVLLL 128



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 281 MFCYYLRRFAP*APCGGGTFLSFHQV 204
           MF YY+ R      C    FL FH V
Sbjct: 143 MFQYYIGRSFTYYVCNTTIFLIFHSV 168


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 238 AVGEPSFLSTK*REMFRPPQPPS 170
           +V EP+  +T   E  RPP  PS
Sbjct: 398 SVPEPTISTTPRPEWARPPSTPS 420


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,178
Number of Sequences: 336
Number of extensions: 1589
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)