Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_H06
(888 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 327 2e-88
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 233 3e-60
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 224 3e-57
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 191 2e-47
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 188 2e-46
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 182 1e-44
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 159 7e-38
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 155 1e-36
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 133 7e-30
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 130 5e-29
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 119 1e-25
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 113 6e-24
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 112 1e-23
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 112 1e-23
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 111 3e-23
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 110 4e-23
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 109 7e-23
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 109 9e-23
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 109 1e-22
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 104 3e-21
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 100 1e-19
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 99 1e-19
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 95 3e-18
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 94 4e-18
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 86 1e-15
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 85 2e-15
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 85 2e-15
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 80 6e-14
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 80 9e-14
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 79 1e-13
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 2e-10
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 66 1e-09
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 65 2e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 65 3e-09
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 60 6e-08
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 60 7e-08
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 59 2e-07
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 55 3e-06
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 54 5e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 52 3e-05
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 49 1e-04
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 49 2e-04
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 47 6e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 47 6e-04
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 46 0.001
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 44 0.004
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 44 0.007
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 43 0.009
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 43 0.012
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 43 0.012
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 43 0.012
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.028
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 42 0.028
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 40 0.085
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 40 0.11
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 39 0.15
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 38 0.34
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 37 0.79
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_Q2HD56 Cluster: Putative uncharacterized protein; n=1; ... 36 1.0
UniRef50_Q4A2Y8 Cluster: Putative membrane protein precursor; n=... 36 1.4
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 3.2
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 4.2
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 34 4.2
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 34 4.2
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 34 5.6
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 8.2
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 9.7
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 9.7
UniRef50_Q7SDC7 Cluster: Predicted protein; n=2; Neurospora cras... 33 9.7
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 327 bits (804), Expect = 2e-88
Identities = 163/186 (87%), Positives = 172/186 (92%)
Frame = +1
Query: 79 MAVXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 258
MAV +SK RKFV G+FKA LNEFLTR LAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 259 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 438
GEKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 439 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 618
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQ
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179
Query: 619 GVLGIK 636
GVLGIK
Sbjct: 180 GVLGIK 185
Score = 46.8 bits (106), Expect = 7e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 635 RVKIMLPWDQQGKNGPKKPQPDHI 706
+VKIMLPWD GK GPKKP PDH+
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHV 208
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 233 bits (571), Expect = 3e-60
Identities = 111/181 (61%), Positives = 137/181 (75%)
Frame = +1
Query: 94 LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 273
LSK +K V GVF A LNEF TR LAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 274 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 453
RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 454 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
F M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGI
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 634 K 636
K
Sbjct: 186 K 186
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 224 bits (547), Expect = 3e-57
Identities = 108/180 (60%), Positives = 138/180 (76%)
Frame = +1
Query: 94 LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 273
LSK R V GVF A L EFL R LA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 274 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 453
RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 454 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
++MESGA+GCEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 191 bits (466), Expect = 2e-47
Identities = 82/181 (45%), Positives = 130/181 (71%)
Frame = +1
Query: 94 LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 273
++K +KFV GVF A L+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 274 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 453
+ +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 454 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
Query: 634 K 636
K
Sbjct: 198 K 198
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 188 bits (457), Expect = 2e-46
Identities = 84/186 (45%), Positives = 125/186 (67%)
Frame = +1
Query: 79 MAVXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 258
M +K R+ + G+F A LNE LTR L ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 259 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 438
GRR++E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120
Query: 439 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 618
Y ++RF+M++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q
Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQ 180
Query: 619 GVLGIK 636
+GI+
Sbjct: 181 ATIGIR 186
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 182 bits (443), Expect = 1e-44
Identities = 109/184 (59%), Positives = 123/184 (66%)
Frame = +1
Query: 85 VXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 264
V +SK RKF GVF A LNE LTR L E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 265 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 444
KG++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 445 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGV 624
L QRAKSMKF DG +I SG P DY++ A RHV LRQGV
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154
Query: 625 LGIK 636
LGIK
Sbjct: 155 LGIK 158
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 159 bits (387), Expect = 7e-38
Identities = 73/176 (41%), Positives = 114/176 (64%)
Frame = +1
Query: 109 KFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 288
+F+ G+ A L EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 289 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 468
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 469 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQ 196
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 155 bits (377), Expect = 1e-36
Identities = 87/151 (57%), Positives = 103/151 (68%)
Frame = +1
Query: 220 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 399
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 400 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 579
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 580 YVNTATRHVLLRQGVLGIKGQNHVAVGPARQ 672
Y+N+ RHVLL+QGVL IK + V +G Q
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQ 235
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 133 bits (321), Expect = 7e-30
Identities = 69/177 (38%), Positives = 105/177 (59%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
R F+ V + ++EFL + L GY G++++ TP+ +++II A V+G GRRIRE
Sbjct: 5 RYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRE 64
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
LT +++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM
Sbjct: 65 LTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMN 122
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+K
Sbjct: 123 NGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVK 179
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 130 bits (314), Expect = 5e-29
Identities = 62/176 (35%), Positives = 106/176 (60%)
Frame = +1
Query: 109 KFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 288
K++ + +A L+EF +R L + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 289 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 468
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 469 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+K
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVK 191
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 119 bits (286), Expect = 1e-25
Identities = 63/177 (35%), Positives = 102/177 (57%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
+KFV G KA ++E+ L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR+
Sbjct: 5 KKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRK 64
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 65 LTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMN 122
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG K
Sbjct: 123 AGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCK 179
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 113 bits (272), Expect = 6e-24
Identities = 59/177 (33%), Positives = 99/177 (55%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
+KF+ GV + +FLT+ L GY G+++ TP+ +++ I A + V+G+ G+++R+
Sbjct: 5 KKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQ 64
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
LT + ++I VE+ ++V A AE L L G R+A +R IME
Sbjct: 65 LTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIME 122
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
SGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++
Sbjct: 123 SGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQ 179
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 112 bits (270), Expect = 1e-23
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = +1
Query: 424 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 603
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 604 VLLRQGVLGIK 636
LLRQG +G++
Sbjct: 90 ALLRQGTIGMR 100
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 112 bits (269), Expect = 1e-23
Identities = 54/176 (30%), Positives = 97/176 (55%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
R FVG V + ++E+ L GYS ++ + TPI + I + A + V+G KG+ ++E
Sbjct: 4 RTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKE 63
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
LT + +++ +E+ ++V L + L G+ R+ + +R +M
Sbjct: 64 LTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMG 121
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
SGA+G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+
Sbjct: 122 SGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGV 177
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 111 bits (266), Expect = 3e-23
Identities = 58/176 (32%), Positives = 99/176 (56%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
+ FV G+ + ++E+L + L GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 4 KDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRA 63
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
+T ++ +F++ VE+ ++V L A + L G+ RR Y +R IM
Sbjct: 64 ITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMA 121
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
+GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+
Sbjct: 122 AGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGV 177
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 110 bits (265), Expect = 4e-23
Identities = 66/186 (35%), Positives = 105/186 (56%)
Frame = +1
Query: 79 MAVXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 258
M+V + + F+ + + ++E+L GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 259 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 438
G +G+ I+++T V+++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 439 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 618
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 619 GVLGIK 636
GV G++
Sbjct: 179 GVEGVE 184
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 109 bits (263), Expect = 7e-23
Identities = 64/199 (32%), Positives = 106/199 (53%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
+KFV G+ K L+E+L L GY G+ ++ P ++II R +G +GR IR
Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRR 71
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
+ VQ+RF + + V + +++ + L A L L G+ RRA YG LR IM
Sbjct: 72 VEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMN 130
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKGQN 645
+GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + + G +G+
Sbjct: 131 AGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVT--- 187
Query: 646 HVAVGPARQERXEEATTRP 702
V + P E +E RP
Sbjct: 188 -VRIMPPDVELPDELEIRP 205
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 109 bits (262), Expect = 9e-23
Identities = 62/177 (35%), Positives = 96/177 (54%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
RK + G+ LNE+L R L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
+ V+++ F I +++ +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+K
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVK 180
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 109 bits (261), Expect = 1e-22
Identities = 55/181 (30%), Positives = 107/181 (59%)
Frame = +1
Query: 94 LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 273
++ ++F+ G+ + ++EF L GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 274 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 453
IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 454 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G+
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178
Query: 634 K 636
+
Sbjct: 179 R 179
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 104 bits (249), Expect = 3e-21
Identities = 62/176 (35%), Positives = 95/176 (53%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
RKFV + K + E++ + G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 5 RKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKA 64
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
LT + K F I V + ++V A A L L G RRA Y L IME
Sbjct: 65 LTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIME 121
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+
Sbjct: 122 AGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGV 177
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 99.5 bits (237), Expect = 1e-19
Identities = 59/177 (33%), Positives = 92/177 (51%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
R F+ K ++E+L + Y+GVE+ TPI + +II A R ++G+ G+ I++
Sbjct: 6 RHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQ 65
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
L V++K F + + + A + L A A L L G RRA + +R IM
Sbjct: 66 LAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMS 123
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
SGA G EV+VSGKL +RAK K +G + SG ++ A +L+ GV G++
Sbjct: 124 SGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVE 180
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 99.1 bits (236), Expect = 1e-19
Identities = 55/177 (31%), Positives = 91/177 (51%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
R F+ + K ++E+L + Y+GVEV TPI + +II A R ++G GR I++
Sbjct: 6 RYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQ 65
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
L + +K F + + + V L A A L L G RRA + +R IM
Sbjct: 66 LAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMN 123
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+GA G E+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++
Sbjct: 124 AGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVE 180
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 94.7 bits (225), Expect = 3e-18
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 1/191 (0%)
Frame = +1
Query: 133 KAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 312
K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E+++++ +
Sbjct: 21 KWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKL 80
Query: 313 NIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 489
+ +++ K+ + A + + G+ RR + +R +ME+GA+G E+
Sbjct: 81 GVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEI 140
Query: 490 VVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKGQNHVAVGPAR 669
VVSGKL +RA+ K G + G + V A HVLL+ G+ GI+ V + PA
Sbjct: 141 VVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIE----VRIAPAT 196
Query: 670 QERXEEATTRP 702
+ +E +P
Sbjct: 197 LQYSDEYKIKP 207
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 94.3 bits (224), Expect = 4e-18
Identities = 55/175 (31%), Positives = 92/175 (52%)
Frame = +1
Query: 112 FVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 291
F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR+L
Sbjct: 10 FIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLM 69
Query: 292 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 471
+++Q F + ++V + V L A A + L + RR +LR +ME+G
Sbjct: 70 TIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAG 127
Query: 472 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
A G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV G++
Sbjct: 128 AVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVE 182
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 86.2 bits (204), Expect = 1e-15
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 1/166 (0%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 17 LREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLK 76
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVVS 498
V++ +++ T L + + G A RRA ++ IME A G ++ +S
Sbjct: 77 SPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITIS 134
Query: 499 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
GKLRG R+ K G++ +G + V HV G++GI+
Sbjct: 135 GKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIR 180
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 85.4 bits (202), Expect = 2e-15
Identities = 46/178 (25%), Positives = 94/178 (52%)
Frame = +1
Query: 100 KXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 279
K RKF+ V + + E++ + G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 280 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 459
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 460 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGV 177
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = +1
Query: 457 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Score = 84.6 bits (200), Expect = 3e-15
Identities = 42/61 (68%), Positives = 48/61 (78%)
Frame = +1
Query: 85 VXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 264
V SK R+FV G+F+A LNEFLTR LAEDG S VEVRVTP + EIII+ TRTQ+VLGE
Sbjct: 2 VVQTSKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGE 61
Query: 265 K 267
K
Sbjct: 62 K 62
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 80.2 bits (189), Expect = 6e-14
Identities = 42/168 (25%), Positives = 87/168 (51%)
Frame = +1
Query: 133 KAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 312
K + E+L L + Y ++ T + + I+I+A + ++G KG++++ L +++ +F
Sbjct: 12 KWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKF 71
Query: 313 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 492
N+ +++ E +A + + G+ RRA LR + E+ +G EV+
Sbjct: 72 NLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQEANVQGAEVI 129
Query: 493 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+SGKL +R++ K+ G++I +G + V A VLL+ G+ ++
Sbjct: 130 ISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVR 177
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 79.8 bits (188), Expect = 9e-14
Identities = 48/181 (26%), Positives = 91/181 (50%)
Frame = -1
Query: 642 LTLDS*YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRF 463
L D+ +LS +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 84 LDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSS 143
Query: 462 HDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSEL 283
H ++++T+ +++ +T +L FGL S + + + +ESL G +L
Sbjct: 144 HGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGGQL 203
Query: 282 TDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQXPSEELIEXCLENPXSNKFXX 103
DS S S++TL G +N+L+ + GV + Q EE ++ +E+ S +
Sbjct: 204 VDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQLSF 263
Query: 102 L 100
L
Sbjct: 264 L 264
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 79.0 bits (186), Expect = 1e-13
Identities = 47/175 (26%), Positives = 85/175 (48%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
R F+ V + + E+L R G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 465
L ++ F + +E+ ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 466 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 630
+GARGC +++SGK+ G R + KF G + G+ +++ + + G +G
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVG 181
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 68.5 bits (160), Expect = 2e-10
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +1
Query: 166 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 297
++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 17 ISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +1
Query: 514 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIK
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIK 42
Score = 38.7 bits (86), Expect = 0.20
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 635 RVKIMLPWDQQGKNGPKKPQPDHIL 709
+VKIML WD GK GPK P PD+++
Sbjct: 42 KVKIMLDWDPTGKLGPKTPLPDNVV 66
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1
Query: 166 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 300
+ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 140 ILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +1
Query: 166 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 297
+ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 407 ILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 41.9 bits (94), Expect = 0.021
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 166 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 258
+ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 282 IPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 64.9 bits (151), Expect = 3e-09
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 1/177 (0%)
Frame = +1
Query: 106 RKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 285
RKF+ EF+ L S V +R TPI + +II + R + + E R
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63
Query: 286 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 462
L +++ +F + + +E+ + L A AE L + + A RR L IM
Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 463 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
+GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV GI
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGI 178
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 60.5 bits (140), Expect = 6e-08
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +1
Query: 94 LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEII 228
+SK RKFV GVF A LN F R LAE+GYSGVEVRVTP ++II
Sbjct: 85 ISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 60.1 bits (139), Expect = 7e-08
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ + + + LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 39 IRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--VS 96
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+V + ++ + A A + ++ A RRA + +MESGARG +V++SG
Sbjct: 97 AGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILSG 156
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G ++A++ K ++G + +H+ DY R G+LGIK
Sbjct: 157 RLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIK 200
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 58.8 bits (136), Expect = 2e-07
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +1
Query: 292 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 468
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 469 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGI 226
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 54.8 bits (126), Expect = 3e-06
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ ++L LA+ S + + I I R ++G+ G+ + +L +++ I
Sbjct: 38 IRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR---IT 94
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ VSG
Sbjct: 95 KKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSG 154
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G + A+S F +G +H+ DY A L + G+LGIK
Sbjct: 155 RLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIK 198
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 54.0 bits (124), Expect = 5e-06
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Frame = +1
Query: 223 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 402
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 403 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 576
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 577 DYVNTATRHVLLRQGVLGIK 636
D+ R G +G+K
Sbjct: 187 DFAMATAR---TTYGAIGVK 203
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 166 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 303
+ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 239 IPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 51.6 bits (118), Expect = 3e-05
Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 38 IRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---LT 94
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ SG
Sbjct: 95 KKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTSG 154
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G + A+S ++ +G + +H+ DY A L G +G+K
Sbjct: 155 RLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVK 198
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 49.2 bits (112), Expect = 1e-04
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 2/197 (1%)
Frame = +1
Query: 52 GFFSAPVAIMAVXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIII 231
GF A A + R F G + E+L L S V + + I I
Sbjct: 9 GFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITI 68
Query: 232 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLI 411
+ R V+G+KG I L + ++ +P V + E+V + A A+S+ +L
Sbjct: 69 FSARPGVVIGKKGEDIENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLE 125
Query: 412 GGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYV 585
+ RRA ++ M GA G +++ SG+L G + A+ + +G + +H+ DY
Sbjct: 126 KRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDY- 184
Query: 586 NTATRHVLLRQGVLGIK 636
T GV+G+K
Sbjct: 185 --GTSEAKTTYGVIGVK 199
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 48.8 bits (111), Expect = 2e-04
Identities = 31/108 (28%), Positives = 57/108 (52%)
Frame = +1
Query: 190 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 369
VE+ P R +++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 370 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 513
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 47.2 bits (107), Expect = 6e-04
Identities = 34/129 (26%), Positives = 67/129 (51%), Gaps = 5/129 (3%)
Frame = +1
Query: 142 LNEFLTRXLAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLGEKGRRIRELTSVVQK 306
+ EF+T+ + Y +G++ + + R E+ +M R ++G+KG+ I L + +Q
Sbjct: 39 IREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ- 97
Query: 307 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 486
N+ + + L E+V L A AE + +L + RR +L M++GA+G +
Sbjct: 98 --NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIK 155
Query: 487 VVVSGKLRG 513
+ ++G+L G
Sbjct: 156 IQMAGRLGG 164
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 47.2 bits (107), Expect = 6e-04
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ ++L + LA V + + + + + R V+G+KG I L +QK +P
Sbjct: 39 VRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGVP 98
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
V + E+V + A A+S+ +L + RRA ++ M GA+G +++ SG
Sbjct: 99 ---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSG 155
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G + A++ + +G + +H+ DY GV+GIK
Sbjct: 156 RLNGAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIK 199
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 46.4 bits (105), Expect = 0.001
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Frame = +1
Query: 178 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 357
G + + + T +I I A R +++G KG I L+ Q+ I + V++ +V
Sbjct: 53 GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLS---QELTRITGKEVKIDVIEVI 109
Query: 358 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 534
+ A E++ Y+L ++ RRA ++ M +GA G + +G+L G + A++ +
Sbjct: 110 KPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQ 169
Query: 535 FVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+ +G + +H+ DY + T H + G +GIK
Sbjct: 170 YKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIK 201
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 44.4 bits (100), Expect = 0.004
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +1
Query: 214 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 393
R I + R ++G KG I L ++++FN + V + E++ T L A AES
Sbjct: 63 RINITVKTARPGIIIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAES 119
Query: 394 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 567
+ ++ + + A + M GA+G +V+V+G+L G + A+ ++ G L +
Sbjct: 120 IASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMVAGRLGGAEIARREWYLRGRLPLQKIK 179
Query: 568 PCNDYVNTATRHVLLRQGVLGIK 636
DY TAT + G +GIK
Sbjct: 180 AIIDY-GTAT--AWTKYGTIGIK 199
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 43.6 bits (98), Expect = 0.007
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 39 IREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKDR 98
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
VE+ +V A A + ++ + R +R +++G +G + VSG
Sbjct: 99 NLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVSG 158
Query: 502 KLRG-QRAKSMKFVDG 546
+L G + A++ +++G
Sbjct: 159 RLGGVEMARTEGYIEG 174
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 43.2 bits (97), Expect = 0.009
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ E+L + L G S +E+ R I + A R V+G G + ++K +
Sbjct: 38 IREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---LT 94
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ ++L +V + A A+ + +L +A RRA + M +GA G + SG
Sbjct: 95 GKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCSG 154
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGV 624
+L G + ++S + +G + +H+ DY R R GV
Sbjct: 155 RLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTFGRIGV 197
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 42.7 bits (96), Expect = 0.012
Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 502 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIK 636
++ G A++ F+ G M + + DY AT + + G+LGIK
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIK 200
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 42.7 bits (96), Expect = 0.012
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ +FL + G +E+ + I + R V+G+ G I L ++K
Sbjct: 39 IRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALRLQLEKMLG-- 96
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+SV L +V + A AE++ +L + RRA + M GARG + VSG
Sbjct: 97 -KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSG 155
Query: 502 KLRG-QRAKSMKFVDG 546
+L G + A++ + DG
Sbjct: 156 RLGGAEIARTEHYHDG 171
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 42.7 bits (96), Expect = 0.012
Identities = 31/132 (23%), Positives = 60/132 (45%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ + ++R + G S V++ T R + I R V+G +G + ++K +
Sbjct: 38 IRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---LT 94
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ V+L +V + A A+ + +L ++ RRA ++ M+ GA+G V SG
Sbjct: 95 GKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCSG 154
Query: 502 KLRGQRAKSMKF 537
+L G +F
Sbjct: 155 RLGGAEMSRSEF 166
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 41.5 bits (93), Expect = 0.028
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 309
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 310 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 489
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 490 VVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+VSG+L G A+ ++ +G + +H+ DY + + G LGIK
Sbjct: 159 MVSGRLNGADIARKEQYTEGTVPLHTLRADIDY---SWDEAMTSYGNLGIK 206
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 41.5 bits (93), Expect = 0.028
Identities = 33/156 (21%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Frame = +1
Query: 175 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 354
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 355 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 534
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 535 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
++ +G + + + + DY + R + GVLGIK
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIK 210
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 39.9 bits (89), Expect = 0.085
Identities = 27/124 (21%), Positives = 61/124 (49%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
L + +++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 39 LRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DLI 95
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ SG
Sbjct: 96 GKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICASG 155
Query: 502 KLRG 513
+L G
Sbjct: 156 RLGG 159
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 39.5 bits (88), Expect = 0.11
Identities = 28/124 (22%), Positives = 58/124 (46%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ +F+ + LA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 502 KLRG 513
+L G
Sbjct: 155 RLNG 158
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 39.1 bits (87), Expect = 0.15
Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ ++L+ G VE+ R + + A ++ ++G + + + + K
Sbjct: 40 IRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG-R 98
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+Q V L +V L A A + + ++ R A V++ ++++GARG + VSG
Sbjct: 99 KQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVSG 158
Query: 502 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G + A+ + G+M +H+ DY + + G++G+K
Sbjct: 159 RLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVK 202
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 37.9 bits (84), Expect = 0.34
Identities = 27/124 (21%), Positives = 52/124 (41%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ +F+ G V + P + + + + V+G+KG I + +++ + P
Sbjct: 38 IRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDKP 97
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
+ +K T C AES+ ++ RR LR M G G ++++SG
Sbjct: 98 VNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILISG 154
Query: 502 KLRG 513
+L G
Sbjct: 155 RLNG 158
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 36.7 bits (81), Expect = 0.79
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Frame = +1
Query: 190 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 336
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 337 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 516
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176
Query: 517 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+++ + D V+ R G+LGIK
Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIK 215
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 1.0
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 226 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 402
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 403 KLIGGLAVRRACYGVLRFIMESGARG 480
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q2HD56 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 1064
Score = 36.3 bits (80), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 588 HCYQTCASQTRSTRNQGSKSCCRGTSKARTXRRSHNQTTSWXTEPK 725
HC++ C + R++ + CC G KA RR H +T + EP+
Sbjct: 533 HCFRICKAHLNCGRHECGEHCCPG-EKAAAERRKHKRTANENYEPE 577
>UniRef50_Q4A2Y8 Cluster: Putative membrane protein precursor; n=1;
Emiliania huxleyi virus 86|Rep: Putative membrane
protein precursor - Emiliania huxleyi virus 86
Length = 251
Score = 35.9 bits (79), Expect = 1.4
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 538 VDGLMIHSGD-PCNDYVNTATRHVLLRQGVLGIKGQNHVAVGPARQERXEEATTRPHP 708
+D +H D P Y A LLRQG +G+ G + ++ATT P P
Sbjct: 61 IDNEQVHMDDIPSEYYAQQAIEEELLRQGEKSFEGEGSTETGDDKPYAVDDATTEPEP 118
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 3.2
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 205 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 381
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 382 QAE 390
QAE
Sbjct: 225 QAE 227
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 4.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 381 PGRISKIQAYRRSRCTSCLLWCSPFHH 461
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 34.3 bits (75), Expect = 4.2
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Frame = +1
Query: 220 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 399
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 400 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 573
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 574 NDYVNTATRHVLLRQGVLGIK 636
DY + R + GVLGIK
Sbjct: 182 IDYCSYRVRTI---YGVLGIK 199
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 34.3 bits (75), Expect = 4.2
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = +1
Query: 214 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 393
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 394 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 567
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 568 PCNDYVNTATRHVLLRQGVLGIK 636
DY A GVLGIK
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIK 203
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 33.9 bits (74), Expect = 5.6
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +1
Query: 127 VFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 306
+FK+ FL+R L+E Y+ ++ RS I R L +K + E+ + ++
Sbjct: 228 IFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVARLQEE 285
Query: 307 RFNIPEQSVELYAEKVATR 363
RFN + +LYAE++ R
Sbjct: 286 RFNYLKSLTQLYAEELKIR 304
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 33.9 bits (74), Expect = 5.6
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Frame = +1
Query: 142 LNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 321
+ ++ L + S V + + + I + R ++G+KG I +L + + N
Sbjct: 39 IRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA- 97
Query: 322 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 501
L +V + A A+S+ +L +A RRA ++ M GA G + +G
Sbjct: 98 --ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCTG 155
Query: 502 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 636
+L G + A+ + +G + +H+ DY T GV G+K
Sbjct: 156 RLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVK 199
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 8.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 319 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 492
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 493 V 495
+
Sbjct: 174 I 174
Score = 23.0 bits (47), Expect(2) = 8.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 475 RGCEVVVSGKLRGQRAKSMKFVDGLMI 555
RG ++ +L GQ+ S+ DG ++
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVV 227
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 9.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 291 SELTDSASFLSEHTLCPGGHNNDLRADGSD 202
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 9.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 441 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 545
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_Q7SDC7 Cluster: Predicted protein; n=2; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 384
Score = 33.1 bits (72), Expect = 9.7
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = -1
Query: 390 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRAD 211
FG G + K TS+ S+ Y+ W+ S+ G + AS SE C + ++
Sbjct: 23 FGAGQTTKPTSTE--SVSTYQDPWSESSIESSGCDKPVVASTTSEKKDCANDDTSAVKKQ 80
Query: 210 GSDPHF-HAGVAVLGQXPSEELIEXCLENPXSN 115
DP H G V E + P +N
Sbjct: 81 NKDPRMTHIGADVSASKSDESKVSTDKNPPTAN 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,418,170
Number of Sequences: 1657284
Number of extensions: 14268285
Number of successful extensions: 37912
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 36520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37866
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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