Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_H06
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 284 1e-77
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 1.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 2.0
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.7
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.7
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.2
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 284 bits (697), Expect = 1e-77
Identities = 138/199 (69%), Positives = 160/199 (80%)
Frame = +1
Query: 82 AVXXLSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 261
A +SK RKFV GVF A LNEF TR L+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 262 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 441
EKGRRIRELT++VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63 EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122
Query: 442 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 621
GVLR++ME+GA+GCEVV+SGKLR RAKSMKF DG MIHSG P D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182
Query: 622 VLGIKGQNHVAVGPARQER 678
VLG+K + + RQ++
Sbjct: 183 VLGVKVKIMLPEPKTRQKK 201
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 591 CYQTCASQTRSTRNQGSKSCCRGTSKART 677
C + C R+Q +K CC G SKA+T
Sbjct: 531 CERLCTILLSCGRHQCNKKCCSGYSKAQT 559
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 448 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 603
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 351 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 455
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 351 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 455
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 351 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 455
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 232 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 408
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 409 IG 414
+G
Sbjct: 784 LG 785
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 660 TSKARTXRRSHNQTTSWXTEPKDEPVPLE 746
T A+ + +Q W T P +P+PLE
Sbjct: 722 TETAKMLDKDEHQNVLWYTVPPLDPIPLE 750
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 513 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 602
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,668
Number of Sequences: 5004
Number of extensions: 56941
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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