Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_H06
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   302   2e-82
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    30   2.1  
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    30   2.8  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    29   4.9  
08_02_0478 + 17621678-17623768                                         28   8.6  
03_05_0494 - 24898268-24898576,24898674-24898781,24900428-249005...    28   8.6  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  302 bits (742), Expect = 2e-82
 Identities = 149/181 (82%), Positives = 160/181 (88%)
 Frame = +1

Query: 94  LSKXRKFVGXGVFKAXLNEFLTRXLAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 273
           +SK RKFV  GVF A LNE LTR LAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 274 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 453
           RIRELTSVVQKRFN PE  VELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67  RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126

Query: 454 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 633
           F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186

Query: 634 K 636
           K
Sbjct: 187 K 187



 Score = 36.3 bits (80), Expect = 0.033
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 635 RVKIMLPWDQQGKNGPKKPQPD 700
           +VKIML WD +GK GP  P PD
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPD 208


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = -1

Query: 624 YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 445
           + L++  + GS  +++   V R D +++Y+    G ++     +NN +++G   HD   N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798

Query: 444 TIASTTYSETSDKLVS 397
            I         ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 219 RADGSDPHFHAGVAVLGQXPSEELIEXCLENPXS 118
           R DG +PH  A   + G    ++    CL  P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -3

Query: 535 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 431
           T L  H   AA    Q H HGH      G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 532 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 627
           K + GL+IHSG   ND+V+++   +  + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452


>03_05_0494 -
           24898268-24898576,24898674-24898781,24900428-24900515,
           24900839-24900975,24901396-24901716
          Length = 320

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 597 QTCASQTRSTRNQGSKSCCRGTSKARTXRRSHNQT-TSW 710
           QTCA +T+S ++QG   C  G   A +    H     SW
Sbjct: 252 QTCAFRTQSCKSQGPVDCSIGIQLAFSGTDKHESVLNSW 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,598,871
Number of Sequences: 37544
Number of extensions: 422143
Number of successful extensions: 1059
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)