Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G23
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0586 - 4203024-4203425,4203527-4203595,4203681-4203746,420...    28   8.9  
06_01_0178 + 1386981-1387505                                           28   8.9  

>06_01_0586 -
           4203024-4203425,4203527-4203595,4203681-4203746,
           4204006-4204071,4204642-4204719,4204811-4205233
          Length = 367

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 895 GXGXFXKGGXGGEKGXXGXXXGGXXT 818
           G G   KGG GGE G  G   GG  T
Sbjct: 244 GGGKASKGGTGGEGGGGGGGGGGGGT 269


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 904 GGVGXGXFXKGGXGGEKGXXGXXXGG 827
           GG G G   KGG GG  G  G   GG
Sbjct: 73  GGGGGGKGRKGGAGGHGGAGGGGGGG 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,630,410
Number of Sequences: 37544
Number of extensions: 146405
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)