Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_G21
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 32 0.091
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 28 2.0
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.4
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 27 3.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 3.4
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 27 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 6.0
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 7.9
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.9
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 32.3 bits (70), Expect = 0.091
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 249 DITTVENRTYRVGLVNMFMSLGYPIGSALSGILLNLIGYYGVFTLSVMLYLFSLVYGYYY 428
D+ +N +G + F+SLG I GI+ +GYY F + ++ L + +
Sbjct: 136 DVVGADNVGSTMGGIFGFISLGEIIAPVFGGIVYESLGYYASFGVCFIILLLDIALRFLM 195
Query: 429 LE 434
+E
Sbjct: 196 IE 197
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 643 YITVNSPCIGPN--TTQTTISSKATRNRRFPGPFLNATLKVSKTSRTSKNSLKKLPQPV 473
Y+T S + P + + IS+ AT+N P FL VSK + KN+ K++ + V
Sbjct: 414 YVTPKSNSLKPGFGKSLSDISNSATKNENVP--FLPPRTGVSKYFKLQKNTEKEIDEQV 470
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 312 GYPIGSALSGILLNLIGY-YGVFTLSVMLYLFSLVYGYYYLEEPNKVVAEKESKKTGCGS 488
G+ +GS SGI L + + +T +++ +F+++ GY+ + P+ E E K+
Sbjct: 187 GFLLGSVFSGIFAQLSWWPWTYWTTAIVCIVFAII-GYFAI--PHIEADEVEEKQK--FD 241
Query: 489 FLREFFDVR-LVLETFKVAFKKGP 557
+L FF V LVL F ++ +GP
Sbjct: 242 YLGAFFGVSGLVLINF--SWNQGP 263
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 186 IFPAITGGWFTNFIGAFXYVGDITTVENRTYRVGLVNMFMSLGYPIGSALSGILLNLI 359
I I GG N + V + + EN LV+ +G +GSA+SG + N +
Sbjct: 468 IIVGIGGGVIANLLTVA--VQTVVSTENFAIVTALVSTVTPIGGAVGSAISGAIWNSV 523
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -2
Query: 655 LANRYITVNSPCIGPNTTQTTISSKATRNRRFPGPFLNATLKVSKTSRTSKNSLKKLP 482
L NR+ +S P+++ +S+ A+ + FP ++ +SK TS+ S KKLP
Sbjct: 604 LVNRF--ASSTLKAPSSSSKGVSNAASSKQSFP-----SSPSISKKLETSRLSTKKLP 654
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 90 PIVGAFXSCLGFIVNTXFFYXLPVEVTAFTESIFPAI 200
PI+G F CLGF FY L + I P I
Sbjct: 82 PIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYI 118
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 375 FTLSVMLYLFSLVYGYYYLEEPNKVVAEKESKKT-GCGSFLREFFDVRLVLETFKVAFKK 551
FT SV L+ SLV VA ++ + G G+F+ FF + + + VA +K
Sbjct: 434 FTSSVFLFTASLVSIIPLAYFIGMAVASISAQSSMGMGAFINAFFGSVIEVFLYSVALRK 493
Query: 552 G 554
G
Sbjct: 494 G 494
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -1
Query: 659 IPREQIHHGELTMHW-----PKYDTDHY*Q*SHTQSSISWPLLKCHLKSLQNKP 513
IP E +H + W P + Y + S+S + K H K LQ+KP
Sbjct: 551 IPEETVHEQVIPRLWILSVSPSLSLEQYNKCMREIRSLSDAVQKSHAKKLQSKP 604
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -2
Query: 613 PNTTQTTISSKATRNRRFPGPFLNATLKVSKTSRTSKNSLKKLPQPVFLLSFSATT 446
P TT+T +SSKA R+ P ++ K T++ +++ LP + + TT
Sbjct: 524 PATTET-VSSKAARSATTPA-YVGGATKTPSTTKAVESTPSTLPTSASTNAAATTT 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,400
Number of Sequences: 5004
Number of extensions: 58764
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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