Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G21
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 495 LRNFHNQSFC-SLSLRQLYSVLPN--SSSHRPD 406
           LRN H+ SFC  L +R    VLPN  SS H  D
Sbjct: 215 LRNVHSSSFCIPLPVR----VLPNFPSSGHWQD 243


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 293 QHVYVSWLSDRQCFKWDSIEFDWLLRRFYVVSNALLVQSGLWLLLFGRTE*SCRREREQK 472
           QH    +  +R C +  + E+    RR+  + N    +  L      R   SC REREQK
Sbjct: 225 QHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNE---KEKLLEERTSRKRYSCSREREQK 281

Query: 473 DW 478
            +
Sbjct: 282 SY 283


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 202 VIAGKIDSVNAVTST 158
           +IAGKI S+N +T+T
Sbjct: 294 LIAGKIMSINNLTAT 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,921
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)