Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G15
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   5.8  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   5.8  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 469 PPPXXPPHXPPP 434
           PPP  PPH PPP
Sbjct: 133 PPPPPPPHYPPP 144


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 426 GXEGGGXWGGXXGGG 470
           G  GGG WGG  GGG
Sbjct: 61  GGRGGGDWGGNNGGG 75



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 426 GXEGGGXWGGXXGGG 470
           G  GGG WGG  GGG
Sbjct: 150 GSNGGGDWGGNGGGG 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,990
Number of Sequences: 27780
Number of extensions: 27695
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)