Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G11
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
05_03_0479 + 14529783-14530613                                         28   8.8  

>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 623 RSSQRWRNPTGL*RYQAFPPWXAPSCA 703
           RS +RWR+   +  + AF    APSCA
Sbjct: 321 RSRRRWRHAAAISSFSAFVAENAPSCA 347


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 350 NESAN---ARGEAVCVLGALPLPRSLTRCAR 433
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +2

Query: 596 PPDEHHKNRRSSQRWRNPTGL*RYQAFPPWXAPSCAXXXXXXXXXGYLSAFLPSGKRGAF 775
           PP+E   N  S   + +PT + RY A     APS           G LSA  PS K   F
Sbjct: 195 PPEEDRANDSSFNPFASPTSVLRYAAADEVTAPS---FEHLLVELGDLSAPPPSTKAAEF 251

Query: 776 SXL 784
             L
Sbjct: 252 DWL 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,333,600
Number of Sequences: 37544
Number of extensions: 391173
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)