Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G10
         (1165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577     29   7.0  
04_04_1129 - 31107892-31110246                                         29   7.0  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    29   9.3  

>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
          Length = 464

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 632 ARXKXPXARXPXHPPPXPPRXRKXTXXTP 718
           A  + P +  P HPPP PPR       +P
Sbjct: 71  ADSRIPASSDPDHPPPRPPRAHSPYPDSP 99


>04_04_1129 - 31107892-31110246
          Length = 784

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 599 PRXXPAXAEXEARXKXPXARXPXHPPPXPPRXRKXTXXTPRS 724
           PR  P       R   P  R P  P   PP  R  T  +PRS
Sbjct: 159 PRRPPRPGHQLLRTPLPLRRYPRPPRHPPPSPRPSTPFSPRS 200


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 620 AEXEARXKXPXARXPXHPPPXPPRXRKXTXXTPRSXEXP 736
           AE   +   P +  P  PPP PP   +    TP+    P
Sbjct: 314 AEMNKQMASPPSNPPPAPPPPPPPPSRFNNTTPKPPPPP 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,244
Number of Sequences: 37544
Number of extensions: 182684
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)