Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G09
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.096
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
 Frame = +2

Query: 731 KXPXPXPPGXXGXSFFGAPLPXXXPXXX------PPPXXXXSGXGGPAXPPP 868
           K P P PP     +   AP+P   P         PPP    +G G P  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +1

Query: 745 PPPGPXRXFXFWGXPSPXPPXTXXPXPXXXFXXGXPRXPPPXP 873
           PPP P       G P P PP      P      G P  PPP P
Sbjct: 752 PPPAP-----IMGGPPPPPP------PPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 743  PXPPGXXGXSFFGAPLPXXXPXXXPPPXXXXSGXGGPAXPPP 868
            P  P         AP P   P   PPP        GP   PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 745 PPPGPXRXFXFWGXPSPXPPXTXXPXPXXXFXXGXPRXPPP 867
           PPP P R       P P    +  P P         R PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,738
Number of Sequences: 5004
Number of extensions: 44287
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)