Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G08
         (861 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 410 PRPSYATPSPPTQKWYPMSPQPKEL 336
           P PS  T SP      P++P+P  L
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPL 95


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 385 RRPRRNGIQCHPSLRNCGISAC 320
           R+P  NG + HPS+ + G   C
Sbjct: 852 RKPYVNGSEYHPSIVSLGEYKC 873


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 518 RQKSFCPREWKWE 556
           R+K  CP+  KWE
Sbjct: 3   RRKQDCPKRMKWE 15


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 404 PSYATPSPPTQKWYPMSPQPKELW 333
           P+Y T S PT K  P   +    W
Sbjct: 38  PTYGTTSHPTSKLVPPDERITYSW 61


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 404 PSYATPSPPTQKWYPMSPQPKELW 333
           P+Y T S PT K  P   +    W
Sbjct: 38  PTYGTTSHPTSKLVPPDERITYSW 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,998
Number of Sequences: 336
Number of extensions: 3187
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)