Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G08
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 449 LLAGPA*IPMTFHPRPSYATPSPPTQKWYPMSPQP 345
           +LA P     TF+P  + +T SPPT    P +P P
Sbjct: 458 VLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTP 492


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 449 LLAGPA*IPMTFHPRPSYATPSPPTQKWYPMSPQP 345
           +LA P     TF+P  + +T SPPT    P +P P
Sbjct: 458 VLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTP 492


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 449 LLAGPA*IPMTFHPRPSYATPSPPTQKWYPMSPQP 345
           +LA P     TF+P  + +T SPPT    P +P P
Sbjct: 458 VLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTP 492


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 HKTSEQASALRHYTSHRYSDCMQHHNPMYERYAKHAEIP 335
           +  ++ A++     SH  S  + H  P Y++Y +HA  P
Sbjct: 174 YSQNQSANSTLTRQSHSQSHTLPHQMPQYQQYHRHATPP 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,438,681
Number of Sequences: 27780
Number of extensions: 314512
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)