Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G03
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.9  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.5  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   7.8  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 573  GHQQLINTLSPGAVLQSEIESWPHWLDNARKVL 671
            GHQ L+N     A L S+++S+  +++ A + L
Sbjct: 1328 GHQSLLNLREKRAFLDSQLKSYNEYIEQAMETL 1360


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 476 EKLPTQQALQAVHDFLACGVEKNLLTE 556
           EKLP   A   ++D + C    +LLTE
Sbjct: 149 EKLPPSSAEDGIYDLVICSFALHLLTE 175


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 422 CEHRYGSNPLLHKFFRCLQPRMNSPSSLNP 333
           C + Y  NP+  ++F C  PR  S  +L P
Sbjct: 20  CRNTY-VNPMFLRYFHCAVPRAISQRALKP 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,116
Number of Sequences: 5004
Number of extensions: 54521
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)