Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G03
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    31   1.2  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    29   3.6  
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666     29   4.7  

>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +3

Query: 567 FVGHQQLINTLSPGAVLQSEIESWP----HW-LDNARKV 668
           F GH  LI    PG +LQ E+E WP    HW L+ A K+
Sbjct: 83  FRGHSVLIRIAVPGLILQQELE-WPPSFNHWNLEQAPKL 120


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -2

Query: 180 GDGNXAALGRCMQGAETHQEHQKRRETVQPTALQPX*EVANA 55
           G G  AA      G   H+  Q RR + QP  L P   VA A
Sbjct: 15  GSGGGAAAAGAPSGEHHHRPRQHRRSSAQPPPLPPPPVVAAA 56


>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
          Length = 145

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 467 DFXEKLPTQQALQAVHDFLACGVEKNLLTEDYHVCWSPAVDK 592
           DF + LP      A++DF     E    ++ + V WSP+V +
Sbjct: 61  DFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSR 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,733
Number of Sequences: 37544
Number of extensions: 389188
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)