Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G03
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   9.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   9.7  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 673  PSTFRALSSQWGQLSISDCSTAPGLSVFINC 581
            P  F+ +S Q   + ISDCST   L+ FI C
Sbjct: 1489 PYPFKEMSQQ---IDISDCSTHYSLTTFITC 1516


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 336  VQGTWAIHSWLEATEKFMKERVGTISVL 419
            VQG W+  S  E  E F+KE+V TI  +
Sbjct: 3136 VQGFWSTASNSEKQEMFLKEKVETIHAM 3163


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 336  VQGTWAIHSWLEATEKFMKERVGTISVL 419
            VQG W+  S  E  E F+KE+V TI  +
Sbjct: 3136 VQGFWSTASNSEKQEMFLKEKVETIHAM 3163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,165
Number of Sequences: 27780
Number of extensions: 317068
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)