Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_G02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.095
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.095
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.2  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 232 GXGGGXXPWGGGXGXPKXKKKXGGXGXXXKKXGXKXGFFGXXGGXXGXXG 381
           G  GG   +GGG G  +   + G  G    + G + G  G  GG  G  G
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -1

Query: 626 PXXXXXPXPPXXXXXXXPPPXXPXPXXXXXGXRXGPPXPXPPXP 495
           P     P PP       PPP  P P         GPP P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAG----AGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = -1

Query: 608 PXPPXXXXXXXPPPXXPXPXXXXXGXRXGPPXPXPPXPXXG 486
           P PP        P   P P         GPP P PP    G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -1

Query: 608 PXPPXXXXXXXPPPXXPXPXXXXXGXRXGPPXP 510
           P PP       PPP  P P     G R   P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 238 GGGXXPWGGGXGXPKXKKKX-GGXGXXXKKXGXKXGFFGXXGGXXGXXG 381
           GGG   +GGG G P       GG G    +     G  G  GG  G  G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 306 PPPXFFFXFXXPXPPPPRXXPPPP 235
           PPP        P PP  R  PPPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 315 GXXPPPXFFFXFXXPXPPPPRXXPPPP 235
           G  PPP     F  P  PPP   PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP---PPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,174
Number of Sequences: 5004
Number of extensions: 20005
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)