Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F24
         (1047 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 759 APPPPPXPR 785
           APPPPP PR
Sbjct: 730 APPPPPPPR 738


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 775 GGGGGAGXXXGRXXGXP 725
           GGGGG+G    +  G P
Sbjct: 524 GGGGGSGSGNNQPPGGP 540


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/40 (27%), Positives = 13/40 (32%)
 Frame = +2

Query: 482 PPPPXXPXPXHXPRPPPXPPXXXGXXPRXXXPXPXXRPPR 601
           PPPP      + P+  P         P    P P    PR
Sbjct: 215 PPPPEEDDDSNIPQNNPKNKQHNFNLPPGAIPVPDKNRPR 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.152    0.550 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,564
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29898130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)