Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F24
         (1047 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.49 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 719 PXRXPXXAAXXPPRAXPPPXPXGPXPGRP 805
           P   P  +   P R  PP    GP PG P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 430 PRPPPXPPPXXXXPXXGXXXPXXPXPXPXAPPPPAXPP 543
           P P P P      P  G   P  P   P    PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -3

Query: 331 GAPXT-PXPXPXPRAXXXRPPPXLGXXPPP 245
           GAP   P P   P+A     PP     PPP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 358 PAAGGXXSXPPXXGGGGGXXRGXXPRPPPXPPP 456
           P++G     P          RG  P P   PPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +2

Query: 518 PRPPPXPPXXXGXXPRXXXPXPXXRPPRPAXPXXP 622
           P P P P        R   P P   PP    P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +2

Query: 701 PAPPXXPXRXPXXAAXXPPRAXPPPXPXGPXPGR 802
           P+P   P      +   P +  PP  P G  P +
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 944  PXPAPXPPXPXPPAXPXPPXP 1006
            P P+  PP   PP  P    P
Sbjct: 40   PNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 196 PPXGGGSGXPPXXXP 240
           PP GG  G PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 429  PPPPPXPPPXG 461
            PPPPP PP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 756 PAPPPPP 776
           PAPPPPP
Sbjct: 341 PAPPPPP 347


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 410 PPPPPXXGG 384
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.152    0.550 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,582
Number of Sequences: 438
Number of extensions: 8465
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)