Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F23
         (1050 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.038
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    32   0.15 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.15 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.47 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.47 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   2.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.038
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 635 PGAXXPXPPPPXXXXPPRPPPAXXAXPXPPG 727
           PG   P PPPP    P +PPP     P PPG
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP-----PPPPG 31



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 662 PPXXXXPPRPPPAXXAXPXPPGP 730
           PP    PP PPP       PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +2

Query: 539 PXPPPXPPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXX-XXPPRPP 694
           P P P PPPP                       G+    PPPP     PPRPP
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/56 (28%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
 Frame = +2

Query: 539 PXPPPXPPP---PXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPP 697
           P PPP PPP      A                   P    P    P    PP PPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 17/62 (27%), Positives = 17/62 (27%)
 Frame = +2

Query: 539  PXPPPXPPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXAXPX 718
            P P P   PP                      P    P  P P    PP P PA    P 
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191

Query: 719  PP 724
            PP
Sbjct: 1192 PP 1193



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 19/65 (29%), Positives = 20/65 (30%)
 Frame = +2

Query: 539  PXPPPXPPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXAXPX 718
            P PPP   PP                      P A  P  P P    PP P P+  A P 
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA-PS 1248

Query: 719  PPGPR 733
               PR
Sbjct: 1249 VSTPR 1253



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 635  PGAXXPXPPPPXXXXPPRPPPAXXAXPXPP 724
            P A  P P PP    PP P P+    P PP
Sbjct: 1184 PAAGVP-PVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +2

Query: 539  PXPPPX-PPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXAXP 715
            P P P    PP  A                   P +  P  P P    PP PPP+  A P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS-EAPP 1199

Query: 716  XP 721
             P
Sbjct: 1200 VP 1201



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +2

Query: 539  PXPPPX-PPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXAXP 715
            P P P    PP  A                   P +  P  P P    PP PPP+  A P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS-TAPP 1218

Query: 716  XP 721
             P
Sbjct: 1219 VP 1220


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +2

Query: 635  PGAXXPXPPPPXXXXPPRP--PPAXXAXPXPPGP 730
            P    P PPPP    PP P  PP     P  P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +2

Query: 641 AXXPXPPP-PXXXXPPRPPP---AXXAXPXPPGP 730
           A  P PPP P    PP PPP      A P PP P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.9 bits (64), Expect = 0.62
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
 Frame = +2

Query: 557 PPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPP--XXXXPPRPPPAXXA 709
           PPPP  A                    G   P PPPP      PP PPP   A
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 656 PPPPXXXXPPRPPPAXXAXPXPPGP 730
           PPPP     P P PA    P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP-PPAP 756



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 635 PGAXXPXPPPPXXXXPPRPPPAXXAXPXPPGP 730
           P    P P P     PP P P     P PP P
Sbjct: 737 PAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPP 767


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 729 GPGGXGXAXXAGGGRGGXXXXGGGGXGXXAPG 634
           GPGG G     GG  GG    GGG  G   PG
Sbjct: 243 GPGGFGGGL--GGFGGGPGGFGGGPGGHGGPG 272


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +2

Query: 539  PXPPPXPPPPXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXA 709
            P PPP PP P                           P  PPP    PP PPP   A
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPP----PPPPPPLVSA 957


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 650 PXPPPPXXXXPPR 688
           P PPPP    PPR
Sbjct: 227 PSPPPPVLHSPPR 239



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 539 PXPPPXPPPP 568
           P  PP PPPP
Sbjct: 223 PRGPPSPPPP 232


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 732 RGPGGXGXAXXAGGGRGGXXXXGGGGXG 649
           RG  G G     GGGRGG     GG  G
Sbjct: 25  RGGFGGGRGGARGGGRGGARGGRGGRGG 52



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = -1

Query: 726 PGGXGXAXXAGGGRGGXXXXGGGGXGXXAPGXXXXXXXXXXXXXXXXXXGAXXGGGGXGG 547
           PG  G    + GGRGG    GG G      G                  GA  G GG  G
Sbjct: 5   PGSRGGRGGSRGGRGGF--NGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62

Query: 546 GXG 538
           G G
Sbjct: 63  GRG 65



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 723 GGXGXAXXAGGGRGGXXXXGGGGXG 649
           GG G    A GGRGG     GG  G
Sbjct: 45  GGRGGRGGARGGRGGSSGGRGGAKG 69


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 18/65 (27%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
 Frame = +2

Query: 539 PXPPPXPPP-PXXAXXXXXXXXXXXXXXXXXXXPGAXXPXPPPPXXXXPPRPPPAXXAXP 715
           P PP  PP  P                      P A    P P      P  PPA  A P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 716 XPPGP 730
             P P
Sbjct: 478 PAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.147    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,190
Number of Sequences: 5004
Number of extensions: 13616
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)