Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F22
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   4.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   8.2  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    26   8.2  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 441 FSKSCVVIIAGFLVIDLSRADFTDNTLLTCSNLYFLYRS 325
           F ++ V +I+GFL+ +  +++F D+      +  +LY S
Sbjct: 344 FQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLS 382


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 685 YSRGPGDPQPFLSXYP 732
           ++RGP DPQP +S  P
Sbjct: 870 FARGPNDPQPHISRLP 885


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +2

Query: 284  SPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQDFENASNKTIK 463
            SP+ V +K     G  +++Y+F + S+V+   S +   +     ++TT D ENA   ++ 
Sbjct: 1147 SPTNV-IKYSADEGRTWQEYQFSEKSKVVVDVSTKPSGVGHQVLLLTTDD-ENAPISSVL 1204

Query: 464  VN 469
            ++
Sbjct: 1205 ID 1206


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +2

Query: 164  PDITVTYAGVQVDLISDDDVTKFNIDDDNLKDAVRTYFGKSPSGVY 301
            PD+   YA   +  ++ +D    + D  +   A++ Y G++P+  +
Sbjct: 1033 PDVNYWYADTMLHAVNTEDFVTTDGDIWSATYAIKRYLGENPTDTF 1078


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 559 YKRNVHQSER*DRLLVHVYLGPERRGH*INHXRRQHWYGKRSYSRG 696
           YK+ + Q +     L+ +YL PE     I    ++   G +SY +G
Sbjct: 55  YKKEIEQLDSKTTYLMSLYLSPETTPEVIYEAAKKGIRGVKSYPKG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,680
Number of Sequences: 5004
Number of extensions: 57743
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)