Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F22
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   3.8  
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609...    28   8.7  
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163...    28   8.7  
01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364...    28   8.7  

>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 530 FAITQEIEYDINVMFTKVSGKTGFSYTSTWGQSEEVTESITIGASTGMESGVTAGVPAIP 709
           +AI   I   +N+ F    G T   + +  G+   V   I +GA+ G    VT   P+ P
Sbjct: 629 WAIRPTIAAGVNINFRDAHGWTALHWAAFCGRERTVVALIALGAAPG---AVTDPTPSFP 685

Query: 710 S 712
           S
Sbjct: 686 S 686



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 299 YLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNP 412
           Y+ +P+P G   K Y  +++ ++LSV+   +++   NP
Sbjct: 505 YMDAPSPLGSTNKIYLQKRLDKLLSVEQDEIQTTLSNP 542


>07_03_0275 -
           16160467-16160555,16160695-16160764,16160860-16160940,
           16161160-16161252,16161430-16161510,16161605-16161694,
           16161812-16161905,16162063-16162131,16162205-16162275,
           16162545-16162628,16162755-16162847,16162995-16163102,
           16163297-16163447,16164026-16164297,16165213-16165218,
           16165389-16165613
          Length = 558

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 757 CTXLSLRGXVXGXLPEVPHRTPLLGD 834
           CT +S R  + G LP+ P   P L D
Sbjct: 385 CTGMSFRDFMVGKLPQAPGELPTLND 410


>05_01_0219 +
           1638318-1638553,1639186-1639336,1639504-1639611,
           1639755-1639847,1639973-1640056,1640314-1640384,
           1640461-1640529,1640686-1640779,1640897-1640986,
           1641082-1641162,1641341-1641433,1641650-1641730,
           1641815-1641884,1642022-1642110
          Length = 469

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 757 CTXLSLRGXVXGXLPEVPHRTPLLGD 834
           CT +S R  + G LP+ P   P L D
Sbjct: 296 CTGMSFRDFMVGKLPQAPGELPTLND 321


>01_06_0009 -
           25535480-25535529,25536225-25536252,25536427-25536496,
           25537020-25537063,25538064-25538228,25538411-25538491,
           25539224-25540258
          Length = 490

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 598 ACLTAHFGEHYVYIILNLLSYCEXLILSP 512
           ACL      H  Y I+N +S+C+ L+L P
Sbjct: 80  ACLVHAMDFHGEYQIINKMSHCDGLVLFP 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,405,487
Number of Sequences: 37544
Number of extensions: 403273
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)