Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F21
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.0  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.0  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.0  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.0  
AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein.     31   4.0  
BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5 p...    30   9.2  
AK027734-1|BAB55329.1|  191|Homo sapiens protein ( Homo sapiens ...    30   9.2  
AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5 p...    30   9.2  
AF039691-1|AAC18040.1|  897|Homo sapiens antigen NY-CO-9 protein.      30   9.2  
AB177853-1|BAD66831.1|  716|Homo sapiens KIAA0600 splice variant...    30   9.2  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 690 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 562
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 690 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 562
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 690 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 562
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 634 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 720
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


>AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein.
          Length = 1080

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 622 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPT 801
           P    V+    T P++  + A LP G + +   +    + S   VR  +GC+ E  F   
Sbjct: 715 PPDQPVKHLFTTGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVA 774

Query: 802 XAPL-SGTIVLSPPG 843
              L +G  ++ PPG
Sbjct: 775 AGELKNGFAIIRPPG 789


>BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5
           protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 661 PLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPTXAPL-SGTIVLSP 837
           P++  + A LP G + +   +    + S   VR  +GC+ E  F      L +G  ++ P
Sbjct: 770 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRP 829

Query: 838 PG 843
           PG
Sbjct: 830 PG 831


>AK027734-1|BAB55329.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14828 fis, clone OVARC1000915, highly similar to
           Homo sapiens histone deacetylase 5 mRNA. ).
          Length = 191

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 661 PLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPTXAPL-SGTIVLSP 837
           P++  + A LP G + +   +    + S   VR  +GC+ E  F      L +G  ++ P
Sbjct: 80  PISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRP 139

Query: 838 PG 843
           PG
Sbjct: 140 PG 141


>AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5
           protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 661 PLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPTXAPL-SGTIVLSP 837
           P++  + A LP G + +   +    + S   VR  +GC+ E  F      L +G  ++ P
Sbjct: 770 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRP 829

Query: 838 PG 843
           PG
Sbjct: 830 PG 831


>AF039691-1|AAC18040.1|  897|Homo sapiens antigen NY-CO-9 protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 661 PLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPTXAPL-SGTIVLSP 837
           P++  + A LP G + +   +    + S   VR  +GC+ E  F      L +G  ++ P
Sbjct: 582 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRP 641

Query: 838 PG 843
           PG
Sbjct: 642 PG 643


>AB177853-1|BAD66831.1|  716|Homo sapiens KIAA0600 splice variant 1
           protein.
          Length = 716

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 661 PLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFXPTXAPL-SGTIVLSP 837
           P++  + A LP G + +   +    + S   VR  +GC+ E  F      L +G  ++ P
Sbjct: 364 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRP 423

Query: 838 PG 843
           PG
Sbjct: 424 PG 425


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,305,024
Number of Sequences: 237096
Number of extensions: 2475631
Number of successful extensions: 11015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11014
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)