Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F18
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    30   2.9  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.8  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   8.8  

>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 303 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 479
           +  Y  +  M   G +P  L++++F      +EA+    L +Y   F+     A +A  Y
Sbjct: 197 LNVYPYYDYMRSNGVIP--LDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAYFAMAY 254

Query: 480 MNQXNVLIRLLHSYYP 527
           +N  NV + +  + +P
Sbjct: 255 LNVTNVPVMVTETGWP 270


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 281  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 379
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 444 CFYKTACYARVYMNQXNVLIRLLHSYYPALRHRQLRSTCSIRSLSSIFCQ 593
           C   +A + R+ +     L  L+H+ +P  R+R  R+TC  R++ S+ C+
Sbjct: 13  CIAASAVHCRLPLAVVGPL--LVHAKWPPSRYRSYRATC-CRAVPSLLCR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,109
Number of Sequences: 37544
Number of extensions: 339850
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)