Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F16
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    29   0.036
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.8  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   4.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   4.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   4.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   4.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   4.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   7.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -3

Query: 399 WAHPISAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPP 262
           + H  + + P+  P     P P   SPI    +   P  P  P PP
Sbjct: 59  FTHHKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 375 LPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT 256
           + + WP AA   +P   + I   A  + P+    P P YT
Sbjct: 131 MAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYT 170


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 72  AFERVRKINLSSRSRQGYSMPG 137
           A E++ + +  SRSRQ  S PG
Sbjct: 731 AIEKLIEKSFDSRSRQNSSFPG 752


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 306 ALYTRP-VAPALPEPPYTILAP 244
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 325 LTDLSACALHASCRSGTTGATLH 257
           L D S C   A+C+  TT  T H
Sbjct: 64  LCDSSPCLNGATCQDHTTHYTCH 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,439
Number of Sequences: 336
Number of extensions: 4081
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)