Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_F15
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.51
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.90
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 637 LPPXPNGGXXXXPPXXGAXPPANPLXXPXXPPKGPNXPXXXPXXCXXFFPXXPP-PPXXX 813
+P P+ P + PP+ P+ P PP P+ P P P PP PP
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG--MPAAPPLPPAAP 474
Query: 814 XXPKXSXP 837
P P
Sbjct: 475 APPPAPAP 482
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +1
Query: 640 PPXPNGGXXXXPPXXGAXPPANPLXXPXXPPKGPNXPXXXPXXCXXFFPXXPPP 801
PP NG P P +N PP+G + P P PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +1
Query: 640 PPXPNGGXXXXPPXXGAXPPANPLXXPXXPPKGPNXPXXXPXXCXXFFPXXPPPP 804
PP P+ P PPA P PP P+ P P P PPPP
Sbjct: 158 PPIPSKAP---PIPSSLPPPAQPAAPVKSPPSAPSLPSAVP----PMPPKVPPPP 205
Score = 29.1 bits (62), Expect = 0.90
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 676 PXXGAXPPANPLXXPXXPPKGPNXPXXXPXXCXXFFPXXPPP 801
P + PP +P P P K P P P P PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +1
Query: 640 PPXPNGGXXXXPPXXGAXPP----ANPLXXPXXPPKGPNXPXXXPXXCXXFFPXXPPPPX 807
PP P+ PP + PP A P+ PP P P P PP P
Sbjct: 144 PPRPS----IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 808 XXXXPKXS 831
P S
Sbjct: 200 KVPPPPLS 207
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -3
Query: 836 GXXXXGXXXFXGGGGXXGKXXXQXXGXXXGXLGPLGGXXGXKRGFAGGXAPXXG 675
G G F GG G G G G LGG G GF GG G
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -1
Query: 697 GGXPRXXGXXPXXPRWXGGGAXXPXXKXRGPGVXGGGXXGRGGP 566
GG G P GGG GPG GGG G GGP
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGG---GPGGFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = +3
Query: 537 PPPGXRXXXFGPPLPXX--PPPXTPGPRXXXXGXXAPPP 647
P P PP P PPP P P G PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 537 PPPGXRXXXFGPPLPXXPPPXTPGPRXXXXGXXAPPPSQRGXXGFXPXXRGXPP 698
PPP P P P P P G PPP G G P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP---IMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Frame = +1
Query: 673 PPXXGAXPPANPLXXPXXPPK----GPNXPXXXPXXCXXFFPXXPPPP 804
PP P P P PP GP P P P PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 537 PPPGXRXXXFGPPLPXXPPP 596
PPP GPP P PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 749 GXLGPLGGXXGXKRGFAGGXAPXXGGKXXXPPLGXGGS 636
G G GG G + GF GG GG+ G GG+
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGA 43
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/40 (30%), Positives = 13/40 (32%)
Frame = +3
Query: 537 PPPGXRXXXFGPPLPXXPPPXTPGPRXXXXGXXAPPPSQR 656
PP PP+P PP P P P P R
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,429
Number of Sequences: 5004
Number of extensions: 14766
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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