Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F12
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    42   2e-04
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   8.2  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +3

Query: 357 SYFSRSDNFFNQYFVKIGWFWTLVITVPYVLLTSYTTCCGKRRMIATAHMVRLLIATVFW 536
           SYF  S N  N  FVK GWFWT        L+  Y     KR  I    + R ++AT+ W
Sbjct: 51  SYFGNSKNLINLIFVKRGWFWT-------SLVYFYHAWDQKRNKIDFKFISRYIVATL-W 102

Query: 537 WGWTT 551
           W + T
Sbjct: 103 WMFVT 107



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 646 GFDISGHCFILIYSSLVLIEEAXAINGWERIKITS 750
           G D+SGH F+L +SSL ++ E  +      IK TS
Sbjct: 155 GHDLSGHVFLLTHSSLFMLSENFSFILNNGIKATS 189


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +1

Query: 655 ISGHCFILIYSSLVLIEEAXAINGWERIKITSXMKDTHGVLMTSXXY 795
           ISG C+I   +    ++ +   NGW+ + + +      G+  T   +
Sbjct: 370 ISGRCYITSQNHGYAVDASSLSNGWKELFVNANDGSNEGIYNTEYPF 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,560
Number of Sequences: 5004
Number of extensions: 52777
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)