Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F12
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-6|CAI58649.1|  283|Caenorhabditis elegans Hypothetical pr...    44   1e-04

>Z81143-6|CAI58649.1|  283|Caenorhabditis elegans Hypothetical
           protein ZK265.9 protein.
          Length = 283

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 39/94 (41%)
 Frame = +3

Query: 360 YFSRSDNFFNQYFVKIGWFWTLVITVPYVLLTSYTTCCGKRRMIATAHMVRLLIATVFWW 539
           Y  +  +  NQY VK+GWFWTLVI  P++  +S      + R      + RL + T  W+
Sbjct: 71  YLVQKHSVLNQYGVKMGWFWTLVIVGPFIWFSS-KAHNRRDRDQPIVDVCRLGVGTACWY 129

Query: 540 GWTTLFNVIENNYGRCNSKSYDNKITCLTNGSFW 641
                F+ +      C+      +  C      W
Sbjct: 130 FSVQFFHKVLALTSMCDKGRTLTRAQCSEKEGVW 163



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +1

Query: 646 GFDISGHCFILIYSSLVLIEEAXAINGWERI 738
           G+DISGHCF++IYS L++ EEA A   ++++
Sbjct: 166 GYDISGHCFLMIYSILIITEEAIAYRHYQQV 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,966
Number of Sequences: 27780
Number of extensions: 301209
Number of successful extensions: 546
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)