Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F10
         (875 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   122   1e-26
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    91   4e-17
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    88   3e-16
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    66   1e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    54   4e-06
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    54   6e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    47   7e-04
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    44   0.007
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.021
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.083
UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;...    36   1.4  
UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase...    34   5.5  
UniRef50_A3MA42 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q47H51 Cluster: NUDIX hydrolase; n=1; Dechloromonas aro...    33   9.5  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  122 bits (294), Expect = 1e-26
 Identities = 58/70 (82%), Positives = 59/70 (84%)
 Frame = +1

Query: 478 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAXVRGGETRQDYKDTRRFPLEAPSCALLFRX 657
           SK+  T    R  RFSIGSAPLTSITKIDA VRGGETRQDYKDTRRFPLEAPSCALLFR 
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 658 CRLPDTCPAF 687
           CRLPDTCP F
Sbjct: 62  CRLPDTCPPF 71



 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 28/48 (58%), Positives = 29/48 (60%)
 Frame = +2

Query: 620 PWKLPRALSCSXPAAYRIPVPPFSLREAWRFLIAHAVXISXRCXSFAP 763
           P + P       P       PPFSLREAWRFLIAHAV IS RC SFAP
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAP 96


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 90.6 bits (215), Expect = 4e-17
 Identities = 43/52 (82%), Positives = 45/52 (86%)
 Frame = +1

Query: 496 VKRPRCWRFSIGSAPLTSITKIDAXVRGGETRQDYKDTRRFPLEAPSCALLF 651
           V+ PR  RFSIGSAPLTSITK DA + GGETRQDYKDTRRFPL APSCALLF
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 87.8 bits (208), Expect = 3e-16
 Identities = 43/56 (76%), Positives = 44/56 (78%)
 Frame = +1

Query: 502 RPRCWRFSIGSAPLTSITKIDAXVRGGETRQDYKDTRRFPLEAPSCALLFRXCRLP 669
           RPR  RFSIGSAPLTSI K DA + GGETRQDYKD RRFPL APSCALLF    LP
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133



 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +3

Query: 309 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 407
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 40/60 (66%), Positives = 41/60 (68%)
 Frame = -1

Query: 551 MLVRGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAERP 372
           MLVRGAEPMEKR +  L  V   LL  CS  L     LILWITVLPPLSEL PLAA ERP
Sbjct: 1   MLVRGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 285 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 443
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 30/55 (54%), Positives = 33/55 (60%)
 Frame = +2

Query: 599 IKIPGVSPWKLPRALSCSXPAAYRIPVPPFSLREAWRFLIAHAVXISXRCXSFAP 763
           +KI  VS   LP ALSCS PA  RIPVPPFSL  +     +    IS RC SFAP
Sbjct: 32  LKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAP 86


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 27/43 (62%), Positives = 30/43 (69%)
 Frame = -1

Query: 698 PEGRKAGQVSGKRQXRNRRAHEGASRGKRLVSL*SCRVSPPLT 570
           P+G+KA QVSGKRQ RNRRAHEGA+  K   SL      PPLT
Sbjct: 57  PKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99



 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 33/62 (53%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
 Frame = -2

Query: 760 SERXTPX*DTYSVSYEKAPRFPKGERRDRYPVSG-RXGTGERTRE-LPGGNAWYLYSPVG 587
           SER  P  DT SVSYEKAPRFPKG++ ++  VSG R G   R  E   G  +    SPVG
Sbjct: 36  SERPKPSRDTSSVSYEKAPRFPKGKKAEQ--VSGKRQGRNRRAHEGAAGEKSPASLSPVG 93

Query: 586 FR 581
           FR
Sbjct: 94  FR 95


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = +1

Query: 433 RIRXITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAXVRGGETRQDYKDTR 612
           R   I  +R   + + + P T        F   S PLT+ITKI    +  +T+ +YK T 
Sbjct: 40  RNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTT 99

Query: 613 RFPLEAPSCALLF 651
            FPL++PS +LLF
Sbjct: 100 PFPLQSPSYSLLF 112


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +1

Query: 682 AFLPSGSVALSHSSRCXYLXSV 747
           AFLPSGSVALSHSSRC YL SV
Sbjct: 16  AFLPSGSVALSHSSRCRYLSSV 37



 Score = 34.7 bits (76), Expect = 3.1
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3

Query: 636 VRSPVPXLPLTGYLSRLSPFG 698
           +RSPVP LPLTGYLS   P G
Sbjct: 1   MRSPVPTLPLTGYLSAFLPSG 21


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +1

Query: 211 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 333
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.083
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 355 ERGSGRAPNTQTASPRALADSLMQ 284
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A6SWU5 Cluster: Uncharacterized conserved protein; n=1;
           Janthinobacterium sp. Marseille|Rep: Uncharacterized
           conserved protein - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 212

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -1

Query: 578 PLT*ASIFVMLVRGAEPMEKRQQRGL---FTVPGLLLAFCSHVLSCVIXLILWITVLPPL 408
           PLT AS+ + L+    P+ + + RGL    T+ G ++A     +S V  L+L  T+L PL
Sbjct: 50  PLTVASLIMFLIANLFPIVEIELRGLRSQTTLTGAVMALAGEGMSLVAMLVLATTLLFPL 109

Query: 407 SELIPL 390
            +L+ L
Sbjct: 110 LQLLIL 115


>UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase
           kinase 10; n=21; Euteleostomi|Rep: Mitogen-activated
           protein kinase kinase kinase 10 - Homo sapiens (Human)
          Length = 954

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 657 GSEQESARGSFQGETPGIFIVLSGFATSDXSVDFCDARQGGGAYGKTPATRPFYGSWP 484
           GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P + P Y S P
Sbjct: 582 GSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPSYLSVP 639


>UniRef50_A3MA42 Cluster: Putative uncharacterized protein; n=1;
           Acinetobacter baumannii ATCC 17978|Rep: Putative
           uncharacterized protein - Acinetobacter baumannii
           (strain ATCC 17978 / NCDC KC 755)
          Length = 183

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -1

Query: 551 MLVRGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAA 381
           ML   A+ + + ++ GL    G+ L  C H+++  + L     ++P L ++I +  A
Sbjct: 1   MLYTAAQTLSRGRKSGLMAAFGIFLGGCFHIIAASLGLTTIFQIIPKLYDIIKILGA 57


>UniRef50_Q47H51 Cluster: NUDIX hydrolase; n=1; Dechloromonas
           aromatica RCB|Rep: NUDIX hydrolase - Dechloromonas
           aromatica (strain RCB)
          Length = 261

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 612 PGIFIVLSGFATSDXSVDFCDARQGGGAYGKTPATRPFYGS--WPFAGLLLTCSFLRY 445
           PG+F  L+GF     +++ C AR+     G   A   ++ S  WPF   L+   F  Y
Sbjct: 155 PGVFSALAGFVEPGETLEECAAREVREEVGIEIANLRYFHSQPWPFPNSLMVAFFADY 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,245,516
Number of Sequences: 1657284
Number of extensions: 14216149
Number of successful extensions: 37167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 35537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37148
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)