Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F08
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    29   0.67 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.0  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.2  

>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 475 VTASRTVPTRQTPDAWCAXTSRNLAIGLRSIPPAMLMPR 591
           + ASR    RQ  +A      RN+A+GL+S  PA+   R
Sbjct: 10  LAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKAR 48


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 426  CSAGRVCEINEHGDAMCNCIXDC 494
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 331 FCLMVSLLVQALRHSVLDVFSLRD 260
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,089
Number of Sequences: 5004
Number of extensions: 38337
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)