Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F06
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    27   3.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   8.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    26   8.4  

>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 584 DDTRYHKGCLPDTVESKLSSDGVLTVTAPKVLALP---STGEKIVPITHTGPVMKKVGSQ 754
           D+  +   C+ D  ES  S    +  +APK+ +LP   +   +    T   PVM++  S 
Sbjct: 39  DNPMFCVSCINDLKESDASEHVTVAESAPKIASLPISKTNDAERSQQTTKAPVMERTESS 98

Query: 755 EPSAVTV 775
             + ++V
Sbjct: 99  HQATLSV 105


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 259 VTATECLRFNQFRDVVEPQFYRPWENTLRQIENVMKPIEQLASAMNQM 402
           V A E L   QF+ V+E +    +E+ + Q  N    +E LAS ++ +
Sbjct: 669 VQADELLNIRQFQRVIEEKQDLNFESDIIQATNDGMVVEDLASKLDHI 716


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 FGAPISSDGSSTLRPAGFLQDVAFQPIDAS*PLQN 274
           FGAP +S  +S L  + F Q+ +      S P+QN
Sbjct: 207 FGAPTTSAFTSQLNASPFSQNTSSNSFTGSNPVQN 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,518
Number of Sequences: 5004
Number of extensions: 59291
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)