Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F04
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    27   2.7  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    27   3.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   8.1  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 474 VPSPPTAKLYPISSQPLVTWCTLCILR-KSLSQSART 367
           +PS P AK YP    P  +    C+ R +S+  SA T
Sbjct: 113 IPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHT 149


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 506 GAHAFGVNTRSIGILLIGDFITNQPPQAQLQSVKDLIEAGVRL 634
           G H+FG++  +  ++ + ++   +P   +LQS+K  IE+   L
Sbjct: 471 GQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLL 513


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 212 LPSPIKLVSDYSFPFVSREEWGARPPTMTSPLKVSPVPIVV 334
           LP  ++L  D +      +    R P + SPLK SPV + V
Sbjct: 522 LPKILELSKDITVNAHPNQPSRPRLPRVASPLKTSPVKLAV 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,367
Number of Sequences: 5004
Number of extensions: 61042
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)