Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F04
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394     32   0.53 
09_04_0416 - 17399059-17399777,17400560-17400704                       29   3.7  
09_02_0082 - 4060018-4061604                                           29   4.9  
02_01_0671 + 4985040-4985186,4985543-4985860                           29   4.9  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   8.6  
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713     28   8.6  

>04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394
          Length = 309

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -2

Query: 510 APIELQPRPSNTVPSPPTAKLYPISSQPLVTWCTLCILRKSLSQSARTKHILGM*LW*IT 331
           AP+   P P    P+P  A L P SSQP     TL   + +L+ SA T  +     +   
Sbjct: 95  APVAAAPPPPPPPPAPVAAALAPTSSQPQT--LTLDFTKPNLTMSAATS-VTSTSFFSSV 151

Query: 330 TMGTGLTLSG-DVIVGGLAPHSSRLTK 253
           T G G    G  ++  G  P S    K
Sbjct: 152 TAGEGSVSKGRSLLSSGKPPLSGHKRK 178


>09_04_0416 - 17399059-17399777,17400560-17400704
          Length = 287

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 272 WGARPPTMTSPLKVSPVPIVVIHHSYIPKICLVRADCERDLRNMQRVHQVTNGWE 436
           WG RPP + +P  + P P    H S     C  R+ C   L   +R       W+
Sbjct: 218 WGERPPDLAAPPPLRPAPSPPRHRS---ARCRRRSSCHPALYGWKRKRGEREKWK 269


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 555 INKIPMLRVLTPNA*AP-IELQPRPSNTVPSPP 460
           +++ P   VLTP A AP +   P P+  VP+PP
Sbjct: 326 VSRKPRSLVLTPPAPAPPVATPPTPATPVPTPP 358


>02_01_0671 + 4985040-4985186,4985543-4985860
          Length = 154

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 457 CETISNI---FPAISHLVHSLHITQISLTVCSN*AYFGNVAVVNHYYGHWT 314
           C  +S+I   FP  S L+ ++HI  I+ +   N  +   + V++   GHWT
Sbjct: 40  CSWVSSIVVKFPRTSVLLTAIHILVINASSHHNTLFCHRLVVIHTSPGHWT 90


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 570 VIKSPINKIPMLRVLTPNA*APIELQPRPSNTVPSPPTAKLYPISSQPLVT 418
           ++ SP    P   ++TP    P  + P P    PSPP    YP  S P VT
Sbjct: 535 IVPSPPEIAPSPPIVTP---MPPIIYPSPPEVTPSPPEITPYP--SPPEVT 580


>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
          Length = 246

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 428 GWEDIGYSFAVGGE--GTVFEGRGWSSIGAHAFGVNTRSIGILLIGD 562
           GW+    +F  GG+  GT+    G+ ++ +  +G NT ++   L  D
Sbjct: 23  GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFND 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,761,236
Number of Sequences: 37544
Number of extensions: 424080
Number of successful extensions: 1247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)