Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical...    30   1.9  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical
           protein Y38H6C.20 protein.
          Length = 736

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -2

Query: 477 TVPSPPTAKLYPISSQPLVTWCTLCILRKSLSQSARTKHILGM*LW*ITTMGTGLTLS-G 301
           ++ +P T    P+ +Q    WC L +LR   +         G+ LW I TMG     +  
Sbjct: 565 SISTPTTPNCTPVENQ--YKWCALELLRGETATCLSDVWSFGVVLWEIFTMGGCPYYNVP 622

Query: 300 DVIVGGLAPHSSRLTK 253
           DV + GL     RL K
Sbjct: 623 DVGIRGLVEKGFRLQK 638


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 525 TPNA*APIELQPRPSNTVPS--PPTAKLYPISSQPL 424
           TP + AP E+ P P +  PS  PPT K    S  PL
Sbjct: 312 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 347


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 525 TPNA*APIELQPRPSNTVPS--PPTAKLYPISSQPL 424
           TP + AP E+ P P +  PS  PPT K    S  PL
Sbjct: 262 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 297


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 525 TPNA*APIELQPRPSNTVPS--PPTAKLYPISSQPL 424
           TP + AP E+ P P +  PS  PPT K    S  PL
Sbjct: 312 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 347


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 525 TPNA*APIELQPRPSNTVPS--PPTAKLYPISSQPL 424
           TP + AP E+ P P +  PS  PPT K    S  PL
Sbjct: 312 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 347


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 558 PINKIPMLRVLTPNA*APIELQPRPSNTVPSPPTAK 451
           P  + P+++   P A AP++ Q  P   V  PPT K
Sbjct: 502 PAPQAPIIQAPAPQAPAPMQPQQPPKQYVTQPPTYK 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,699
Number of Sequences: 27780
Number of extensions: 352569
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)