Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 347 YIPKICLVRADCERDLRNMQRVHQVTNGWEDIGYSFAVGGEGTVFEGR 490
           + P + +V AD   +L   QRV     G+E++ Y   +    T+  GR
Sbjct: 176 FFPALNIV-ADSFIELIRRQRVGYKVTGFEELAYKMGLESTCTLILGR 222


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 342 W*ITTMGTGLTLSGDVIVGGLAP 274
           W +      + + GD+++GGL P
Sbjct: 42  WRVAGRSESVVIPGDIVLGGLFP 64


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 278 ARPPTMTSPLKVSPVPI 328
           A PPT+  PL  +P P+
Sbjct: 212 ACPPTLACPLNPNPQPL 228


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 KYDGRSTFIYYHELNLDSDCI 213
           K DG++T +Y+H   +  D I
Sbjct: 55  KKDGQATVVYFHVTVMGLDSI 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,877
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)