Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...   102   8e-23
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    47   4e-06
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    44   2e-05
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    44   3e-05
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    43   5e-05
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    33   0.039
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score =  102 bits (244), Expect = 8e-23
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +2

Query: 173 LKAEGYKFPALKES--DAMFSADTAPEWADGEVCHRCRIAFSLMVRRHHCRACGQVFCQQ 346
           LK   Y+FP   ++        +T P+W D EVC RCR  F+   R+HHCR CG VFC Q
Sbjct: 143 LKDGDYEFPEPSQNITSKFLDTETPPDWTDSEVCLRCRTPFTFTNRKHHCRNCGGVFCNQ 202

Query: 347 CSSKTSTLPKFGIEKEVRVCDACFDKVSRPPTSTAK 454
           CSSKT +LP  GI + VRVCD+C+   ++P  S ++
Sbjct: 203 CSSKTLSLPHLGINQPVRVCDSCYSLRTKPKGSKSR 238


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 266 CHRCRIAFSLMVRRHHCRACGQVFCQQCSSKTSTLPKFGIEKEVRVCDAC 415
           C  C   F+L  R+HHCR CG++ C+ C  +      F ++  ++VC  C
Sbjct: 66  CSLCETEFTLFRRKHHCRICGKIICKYCLKEAPGF-IFRLQGSIKVCRPC 114


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 266 CHRCRIAFSLMVRRHHCRACGQVFCQQCSSKTSTLP 373
           C+ C   F+   RRHHCR CG++FC  C +  + LP
Sbjct: 33  CNNCGGPFTWFRRRHHCRWCGKLFCYNCCNSFAKLP 68


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
 Frame = +2

Query: 251 ADGEVCH--RCRIAFSLMVRRHHCRACGQVFCQQCSSKTSTLP---KFGIEKEV-RVCDA 412
           +D  VC    C + F L  RRHHCR CG +FC     +   L    KF +   + R C +
Sbjct: 155 SDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFCALHCDRNIPLTMDVKFCLAGSLYRSCVS 214

Query: 413 CFDKVSRPPTS---TAKLEITDTSNDYGPTQPQKRPP 514
           CF +  +   S    +  +IT   +   P Q    PP
Sbjct: 215 CFYEYLKWKQSIDLASSNDITVIESTIAPQQATTHPP 251


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 260 EVCHRCRIAFSLMVRRHHCRACGQVFCQQCSSKTSTLPKFGIEKEVRVCDAC 415
           ++C  C  +F+L  RR HCR CG+V C+ C  + S LP+    + + +C +C
Sbjct: 279 QICPECNNSFTLTRRRRHCRLCGRVICRFCVLEIS-LPQH--PQPLLICMSC 327



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = +2

Query: 242 PEWADGEVCH--RCRIAFSLMVRRHHCRACGQVFCQQCSS---KTSTLPKFGIEKE--VR 400
           PE  D  VCH   C    + +    HCR CG +FC   S    K S    +  E     R
Sbjct: 133 PEVPD-MVCHDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCR 191

Query: 401 VCDACFD 421
           VC  C++
Sbjct: 192 VCRECYE 198


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 260  EVCHRCRIAFSLMVRRHHCRACGQV-FCQQCSS 355
            E+C  C   FSLM  R  CRACG    C  C S
Sbjct: 2554 ELCSLCDSRFSLMEWRSQCRACGNSNVCSDCVS 2586


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 468 THQMIMDLHNHKSALLVVKLLRNCXR 545
           TH ++++LHN ++  LVV  L  C R
Sbjct: 26  THYVLLNLHNEQNLRLVVAQLIACGR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,731
Number of Sequences: 5004
Number of extensions: 36588
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)