Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_F02
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.29 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.3  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 314 CRACGQVFCQQCSSKTSTLPKFGIEKEVRVCDAC 415
           C+ CG+V C + S K     K    +E   C  C
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAERQEEYRCVIC 41


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 584 EXEHKXKXRXSRPHIAPDPTPHRPNISTXPSS 679
           E E + +   +RP   P P P  P +   P +
Sbjct: 91  EAESEAEPGNNRPVYIPQPRPPHPRLRREPEA 122


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 272 CDKLLHQPIPVLYQQRTLHLIPSMQEICNL 183
           C+K+L     +    + +H  PS + ICN+
Sbjct: 8   CNKILTSLTRLRRHIQNVHTRPSKEPICNI 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,062
Number of Sequences: 438
Number of extensions: 2491
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)