Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_E19
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   7.8  

>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/75 (21%), Positives = 35/75 (46%)
 Frame = -2

Query: 440 YSIMSRTLLHSIYLGLXT*ILKNYFSGFRCFRGLQIFIKFVEAXYHRAKVXLNXLRGQGG 261
           Y +  R +++  YL +   + ++Y  GF  FR ++ ++  +    H+ ++ +  + G G 
Sbjct: 60  YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118

Query: 260 FNFXPQXLNCXLRTL 216
            +     L C L  L
Sbjct: 119 LHPVGFGLACHLGVL 133


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 365 RSNFLVSKYXTPNISNVIMFSTLLNKS 445
           ++  L ++  TPN SNV + ++L+N+S
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRS 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,591
Number of Sequences: 5004
Number of extensions: 18219
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)