Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_E12
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   116   5e-27
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   112   6e-26
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    28   2.1  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   4.8  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  116 bits (279), Expect = 5e-27
 Identities = 65/122 (53%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
 Frame = +3

Query: 96  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDXXXXXX 275
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   +      
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 276 XXXXXXXXXXXXXALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNXMKXVR 452
                        ALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKN  K V 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 453 GT 458
           GT
Sbjct: 120 GT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  112 bits (270), Expect = 6e-26
 Identities = 62/122 (50%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
 Frame = +3

Query: 96  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDXXXXXX 275
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK          
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 276 XXXXXXXXXXXXXALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNXMKXVR 452
                        ALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKN  K V 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 453 GT 458
           GT
Sbjct: 120 GT 121


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 29/79 (36%), Positives = 37/79 (46%)
 Frame = +2

Query: 161 ADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFXDXLRRWXVXWIRFDLRHTRS 340
           A G    +SR    Q+DRD  E R+N +   R S   R+ D  RR      R D R+ R 
Sbjct: 14  AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69

Query: 341 GQEVRAQAQVSPPRPVREE 397
            + VR +   SP RPV  E
Sbjct: 70  RESVREE---SPRRPVEHE 85


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 348 KFEPKHRLARHGLYEKKRPTRKQRKERKN 434
           K+ P  R    G + +KR  RK++ E+KN
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKN 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,637
Number of Sequences: 5004
Number of extensions: 35055
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)