Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_E12
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...   122   5e-28
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...   118   6e-27
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...    91   6e-22
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369...    30   2.9  

>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score =  122 bits (293), Expect = 5e-28
 Identities = 61/115 (53%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
 Frame = +3

Query: 114 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDXXXXXXXXXXX 290
           T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V   +           
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70

Query: 291 XXXXXXXXALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNXMKXVRG 455
                    LIYD LD AKK+EPK+RL R+GL  K   +RKQ KERKN  K +RG
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score =  118 bits (284), Expect = 6e-27
 Identities = 60/115 (52%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
 Frame = +3

Query: 114 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDXXXXXXXXXXX 290
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   +           
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 291 XXXXXXXXALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNXMKXVRG 455
                    LIYD LD AKK+EPK+RL R+GL  K   +RKQ KERKN  K +RG
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score = 91.5 bits (217), Expect(2) = 6e-22
 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
 Frame = +3

Query: 114 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDXXXXXXXXXXX 290
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   +           
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 291 XXXXXXXXALIYDTLDLAKKFEPKHRLAR 377
                    LIYD LD AKK+EPK+RL R
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99



 Score = 31.1 bits (67), Expect(2) = 6e-22
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 378 HGLYEKKRPTRKQRKERKNXMKXVRG 455
           +GL  K   +RKQ KERKN  K +RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153


>01_01_0502 -
           3688940-3689149,3689180-3689251,3690028-3690064,
           3691224-3691705
          Length = 266

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 308 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 409
           W R  +R +  G E    AQ+ PPRPV  + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,712
Number of Sequences: 37544
Number of extensions: 253240
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)