Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_E09
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.4  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 796 FVHXAQXGADDXHRTEIPTA*XMR---KRHASRREKGGQVSGKRQGRNRRAH 650
           ++   +  A+  + + +P    MR   KR  +++ +G + +     +NRRAH
Sbjct: 12  YIERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAH 63


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 618 DTRRFPLEAPSCALLFRPCR 677
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 25  FYVEPP*VLNCWY 63
           F + PP V+NC+Y
Sbjct: 103 FCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 25  FYVEPP*VLNCWY 63
           F + PP V+NC+Y
Sbjct: 69  FCMSPPMVINCYY 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,816
Number of Sequences: 438
Number of extensions: 5055
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)